View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20038_low_2 (Length: 548)
Name: NF20038_low_2
Description: NF20038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20038_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 418; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 6 - 541
Target Start/End: Original strand, 38718498 - 38719029
Alignment:
| Q |
6 |
acctttttggcaacacccttccactatcaaccaaccccttaaattgaatgaagttctgcttcattgtagtgtttaaatctaaagttgttgattcaactaa |
105 |
Q |
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| T |
38718498 |
acctttttggcaacacccttccactatcaaccaaccccttaaattgaatgaagttctgcttcattgtagtgtataaatctaaagttgtttattcaactaa |
38718597 |
T |
|
| Q |
106 |
gattaatggttgaagatgagggtgcatatagaacaattttgggtgttcaatttttcaaaaacaggnnnnnnnntctaacttctagtgtggttgatttctg |
205 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| |
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| T |
38718598 |
gatcaatggttgaagatgagggtgcatatagaacaattttgggtgttcaatttttcaaaaacaggaaaaaaaatctaacttctagtgtggttgatt-ctg |
38718696 |
T |
|
| Q |
206 |
ttgaaaataaattataatatttgtataagataagtttggatttgttatgtatctagaggttttacttacttttatgtttagataatgatgttttatttta |
305 |
Q |
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| T |
38718697 |
ttgaaaataaattataatatttgtataagataagtttgaatttgttatgtatctagaggttttacttacttttatgtttagataatgatgttttatttta |
38718796 |
T |
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| Q |
306 |
gcttgttagttaaactattgattgtaaaatacatgattgatgattgtacactttaactcattcaatgaaacataaatttctataattcattttcttttaa |
405 |
Q |
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| T |
38718797 |
gcttgttagttaaattattgattgtaaaatacatgattgat---tgtacactttaactcattcaatgaaacataaatttctataattcattttctttcaa |
38718893 |
T |
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| Q |
406 |
gtagtttagtggttaaaaattcagctttttaagatgaataaatgaagtatctgaaattcaaacatcgacccttcatatattatgcaatgctcttagaact |
505 |
Q |
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| T |
38718894 |
gtaatttagtggttagatattcagctttttaaaatgaataaatgaagtgtctagaatttaaacatcgacccttcatatattatgcaatgctcctacaact |
38718993 |
T |
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| Q |
506 |
gagatatactcgtgtataccaaacttccataatttt |
541 |
Q |
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| T |
38718994 |
gagatatactcgaatataccaaacttccataatttt |
38719029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 409 - 448
Target Start/End: Original strand, 804284 - 804323
Alignment:
| Q |
409 |
gtttagtggttaaaaattcagctttttaagatgaataaat |
448 |
Q |
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| T |
804284 |
gtttagtggttagaaattcagctttttaagatgaataaat |
804323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 16 - 68
Target Start/End: Original strand, 13335415 - 13335467
Alignment:
| Q |
16 |
caacacccttccactatcaaccaaccccttaaattgaatgaagttctgcttca |
68 |
Q |
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| T |
13335415 |
caacacccttccgctatcgatcagccccttgaattgaatgaagttctgcttca |
13335467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 402 - 446
Target Start/End: Complemental strand, 30086805 - 30086761
Alignment:
| Q |
402 |
ttaagtagtttagtggttaaaaattcagctttttaagatgaataa |
446 |
Q |
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| T |
30086805 |
ttaagtagtttagtggttagaaattcaattttttaagatgaataa |
30086761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 395 - 493
Target Start/End: Original strand, 37318507 - 37318606
Alignment:
| Q |
395 |
ttttcttttaagtagtttagtggttaaaaattcagctttttaagatgaataaatgaagtatctgaaattcaaacatcgacc-cttcatatattatgcaat |
493 |
Q |
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| T |
37318507 |
ttttctattaagtagtttgttggttaaaaattcatttttttaaagtgaataagtgagttgtccgaagttcaaacttcgacctctgcatatattatgcaat |
37318606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 433 - 493
Target Start/End: Complemental strand, 29238256 - 29238196
Alignment:
| Q |
433 |
tttaagatgaataaatgaagtatctgaaattcaaacatcgacccttcatatattatgcaat |
493 |
Q |
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|||||| ||||||||||| ||| |||||||| |||||||||| | |||||||||| |||| |
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| T |
29238256 |
tttaaggtgaataaatgagatatatgaaattcgaacatcgaccatgcatatattatacaat |
29238196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 403 - 443
Target Start/End: Complemental strand, 29712462 - 29712422
Alignment:
| Q |
403 |
taagtagtttagtggttaaaaattcagctttttaagatgaa |
443 |
Q |
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| T |
29712462 |
taagtagtttagtggttcaaaattaacctttttaagatgaa |
29712422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 431 - 476
Target Start/End: Original strand, 19905157 - 19905202
Alignment:
| Q |
431 |
tttttaagatgaataaatgaagtatctgaaattcaaacatcgaccc |
476 |
Q |
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| T |
19905157 |
tttttaagatgaataaatgatgtatctgaagttagaacatcgaccc |
19905202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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