View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20038_low_3 (Length: 530)

Name: NF20038_low_3
Description: NF20038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20038_low_3
NF20038_low_3
[»] chr2 (5 HSPs)
chr2 (2-514)||(11849718-11850230)
chr2 (2-514)||(11844989-11845501)
chr2 (323-418)||(11853005-11853100)
chr2 (315-410)||(2015260-2015355)
chr2 (147-191)||(718434-718478)
[»] chr3 (9 HSPs)
chr3 (145-202)||(40598037-40598094)
chr3 (145-202)||(40598097-40598154)
chr3 (316-412)||(40591285-40591381)
chr3 (324-412)||(40568379-40568467)
chr3 (315-413)||(40579436-40579534)
chr3 (331-413)||(40601934-40602016)
chr3 (145-185)||(40597994-40598034)
chr3 (315-410)||(40572982-40573077)
chr3 (315-410)||(40597769-40597864)
[»] chr8 (1 HSPs)
chr8 (149-190)||(36870911-36870952)


Alignment Details
Target: chr2 (Bit Score: 477; Significance: 0; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 477; E-Value: 0
Query Start/End: Original strand, 2 - 514
Target Start/End: Complemental strand, 11850230 - 11849718
Alignment:
Q  2 catcacttttctcagtaaattgacttgtatgaaagtactcggggtctaagtaaccaaaagtaccttgaactactgtggtaaggtgagtagcttcaattga 101  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11850230 catcacttttctcagtaaattgacttgtatgaaagtactcagggtctaagtaaccaaaagtaccttgaactactgtggtaaggtgagtagcttcaattga 11850131  T
Q  102 aattattcttgatactccaaaatccgctaattttgccctatatttttcatcaagtagtatatttgtagatttgatatctctatgataaatgggttgagat 201  Q
    |||||||||||||||||| ||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11850130 aattattcttgatactccgaaatctgctaattttggcctatatttttcatcaagtagtatatttgtagatttgatatctctatgataaatgggttgagat 11850031  T
Q  202 gcaattgagtgtaagtaaaataatgctccggcgatttcagtaccaattctcaaacgcatgtcccatgtcattggtatgtcttcattttggtcgtgcaaat 301  Q
    ||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11850030 gcaattgagtgtaagtaaaataatgctccagcaatttccgtaccaattctcaaacgcatgtcccatgtcattggtatgtcttcattttggtcgtgcaaat 11849931  T
Q  302 actcaaaaaggtcaccattaggaatgaattcataaacaagcaatggaatttctgtctccaaacaacatcctaatatctggaccacatttctattgttgat 401  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  11849930 actgaaaaaggtcaccattaggaatgaattcataaacaagcaatggaatttctgtctccaaacaacatcctaatatcttgaccacatttctattgttgat 11849831  T
Q  402 ttgtgaaagaataacaaactcgttaataaactcttcgacctttccttcaaccttaaactttttcactgcaacaattttaccgtctactagcatgcctttg 501  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11849830 ttgtgaaagaataacaaactcgttaataaactcttcgacctttccttcaaccttaaactttttcactgcaacaattttaccgtctactagcatgcctttg 11849731  T
Q  502 taaactgttcctt 514  Q
    |||||||||||||    
T  11849730 taaactgttcctt 11849718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 2 - 514
Target Start/End: Complemental strand, 11845501 - 11844989
Alignment:
Q  2 catcacttttctcagtaaattgacttgtatgaaagtactcggggtctaagtaaccaaaagtaccttgaactactgtggtaaggtgagtagcttcaattga 101  Q
    ||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  11845501 catcacttttctcggtaaattgacttgtatgaaagtactcagggtctaagtaaccaaaagtaccttgaactaccgtggtaaggtgagtagcttcaattga 11845402  T
Q  102 aattattcttgatactccaaaatccgctaattttgccctatatttttcatcaagtagtatatttgtagatttgatatctctatgataaatgggttgagat 201  Q
     ||||||||||||  ||| ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11845401 tattattcttgatgttccgaaatctgctaattttgccctatacttttcatcaagtagtatatttgtagatttgatatctctatgataaatgggttgagat 11845302  T
Q  202 gcaattgagtgtaagtaaaataatgctccggcgatttcagtaccaattctcaaacgcatgtcccatgtcattggtatgtcttcattttggtcgtgcaaat 301  Q
    |||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||| || |||||| | |||||||    
T  11845301 gcaattgagtgtaagtaaaataatgctccggcgatttcagttgcaattctcaaacgcatgtcccatgtcattggtatgtcctcgttttgggcatgcaaat 11845202  T
Q  302 actcaaaaaggtcaccattaggaatgaattcataaacaagcaatggaatttctgtctccaaacaacatcctaatatctggaccacatttctattgttgat 401  Q
    ||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  11845201 actgaaaaaggttaccattaggaatgaattcataaacaagcaatggaatttctgtctccaaacaacatcctaatatcttgaccacatttctattgttgat 11845102  T
Q  402 ttgtgaaagaataacaaactcgttaataaactcttcgacctttccttcaaccttaaactttttcactgcaacaattttaccgtctactagcatgcctttg 501  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11845101 ttgtgaaagaataacaaactcgttaataaactcttcgacctttccttcaaccttaaactttttcactgcaacaattttaccgtctactagcatgcctttg 11845002  T
Q  502 taaactgttcctt 514  Q
    |||||||||||||    
T  11845001 taaactgttcctt 11844989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 323 - 418
Target Start/End: Complemental strand, 11853100 - 11853005
Alignment:
Q  323 gaatgaattcataaacaagcaatggaatttctgtctccaaacaacatcctaatatctggaccacatttctattgttgatttgtgaaagaataacaa 418  Q
    ||||||||||||||| |||||||||||| | |||||||||||||||||||||||||| ||||||| ||||   || ||||||||||||||||||||    
T  11853100 gaatgaattcataaataagcaatggaatatttgtctccaaacaacatcctaatatctagaccacaattctgcagtggatttgtgaaagaataacaa 11853005  T

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Target: chr2; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 315 - 410
Target Start/End: Original strand, 2015260 - 2015355
Alignment:
Q  315 accattaggaatgaattcataaacaagcaatggaatttctgtctccaaacaacatcctaatatctggaccacatttctattgttgatttgtgaaag 410  Q
    |||||| ||||||||||| |||||||| || |||| ||||||||| |||||||| || || | ||  ||||||||||||| |||||||||||||||    
T  2015260 accattgggaatgaattcgtaaacaagtaaaggaacttctgtctctaaacaacaacccaagagctttaccacatttctatggttgatttgtgaaag 2015355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 147 - 191
Target Start/End: Complemental strand, 718478 - 718434
Alignment:
Q  147 ttcatcaagtagtatatttgtagatttgatatctctatgataaat 191  Q
    |||||||||||||||||| |||| ||||||||| |||||||||||    
T  718478 ttcatcaagtagtatattggtagctttgatatccctatgataaat 718434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 58; Significance: 4e-24; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 145 - 202
Target Start/End: Complemental strand, 40598094 - 40598037
Alignment:
Q  145 ttttcatcaagtagtatatttgtagatttgatatctctatgataaatgggttgagatg 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40598094 ttttcatcaagtagtatatttgtagatttgatatctctatgataaatgggttgagatg 40598037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 145 - 202
Target Start/End: Complemental strand, 40598154 - 40598097
Alignment:
Q  145 ttttcatcaagtagtatatttgtagatttgatatctctatgataaatgggttgagatg 202  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  40598154 ttttcatctagtagtatatttgtagatttgatatctctatgataaatgggttgagatg 40598097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 316 - 412
Target Start/End: Complemental strand, 40591381 - 40591285
Alignment:
Q  316 ccattaggaatgaattcataaacaagcaatggaatttctgtctccaaacaacatcctaatatctggaccacatttctattgttgatttgtgaaagaa 412  Q
    ||||| |||||||||||||||||||||||||||| ||||||||| |||||||| || || ||    ||||||||||||| ||||||||| |||||||    
T  40591381 ccattgggaatgaattcataaacaagcaatggaacttctgtctctaaacaacaacccaaaattcttaccacatttctatggttgatttgagaaagaa 40591285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 324 - 412
Target Start/End: Complemental strand, 40568467 - 40568379
Alignment:
Q  324 aatgaattcataaacaagcaatggaatttctgtctccaaacaacatcctaatatctggaccacatttctattgttgatttgtgaaagaa 412  Q
    ||||||||||||||||||||| |||| ||||||||| |||||||| || || | ||  ||||||||||||| ||||||||| |||||||    
T  40568467 aatgaattcataaacaagcaagggaacttctgtctctaaacaacaacccaagagctttaccacatttctatggttgatttgggaaagaa 40568379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 315 - 413
Target Start/End: Complemental strand, 40579534 - 40579436
Alignment:
Q  315 accattaggaatgaattcataaacaagcaatggaatttctgtctccaaacaacatcctaatatctggaccacatttctattgttgatttgtgaaagaat 413  Q
    |||||| ||||| ||||| |||||||| || |||| ||||||||| |||||||| || || ||||  |||||||||||||  |||||||| ||||||||    
T  40579534 accattgggaataaattcgtaaacaagtaacggaacttctgtctctaaacaacaacccaaaatctttaccacatttctatgattgatttgggaaagaat 40579436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 331 - 413
Target Start/End: Complemental strand, 40602016 - 40601934
Alignment:
Q  331 tcataaacaagcaatggaatttctgtctccaaacaacatcctaatatctggaccacatttctattgttgatttgtgaaagaat 413  Q
    ||||||||||||||||||| |||||| || ||||| || || || | ||| ||||||||||||| ||||||||| ||||||||    
T  40602016 tcataaacaagcaatggaacttctgtttctaaacagcaacccaaaagctgtaccacatttctatggttgatttgagaaagaat 40601934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 145 - 185
Target Start/End: Complemental strand, 40598034 - 40597994
Alignment:
Q  145 ttttcatcaagtagtatatttgtagatttgatatctctatg 185  Q
    ||||||||||||||||||||||||||||||| |||||||||    
T  40598034 ttttcatcaagtagtatatttgtagatttgacatctctatg 40597994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 315 - 410
Target Start/End: Complemental strand, 40573077 - 40572982
Alignment:
Q  315 accattaggaatgaattcataaacaagcaatggaatttctgtctccaaacaacatcctaatatctggaccacatttctattgttgatttgtgaaag 410  Q
    |||||| ||||| |||||||| ||||  || |||| ||||||||| |||||||| || || ||||  ||||||||||||| ||||||||| |||||    
T  40573077 accattgggaataaattcatacacaactaagggaacttctgtctctaaacaacagcccaagatctttaccacatttctatggttgatttgggaaag 40572982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 315 - 410
Target Start/End: Complemental strand, 40597864 - 40597769
Alignment:
Q  315 accattaggaatgaattcataaacaagcaatggaatttctgtctccaaacaacatcctaatatctggaccacatttctattgttgatttgtgaaag 410  Q
    |||||| ||||| |||||||||||||||||||||| |||||| || |||||||| ||||  |  |  |||||||| |||| ||||||||| |||||    
T  40597864 accattgggaataaattcataaacaagcaatggaacttctgtttctaaacaacaacctacaagttttaccacattcctatggttgatttgggaaag 40597769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 149 - 190
Target Start/End: Original strand, 36870911 - 36870952
Alignment:
Q  149 catcaagtagtatatttgtagatttgatatctctatgataaa 190  Q
    |||||||||||||||| |||| |||||||||||| |||||||    
T  36870911 catcaagtagtatattggtagctttgatatctctgtgataaa 36870952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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