View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20038_low_4 (Length: 406)
Name: NF20038_low_4
Description: NF20038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20038_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 121; Significance: 7e-62; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 254 - 402
Target Start/End: Original strand, 21373756 - 21373904
Alignment:
| Q |
254 |
ctcccaacctagaatagtgaaagaggtgttagagagtttttgctatgcttctgggtttaaagttaatattcaaaaatttagattcaggtcttctgctaat |
353 |
Q |
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||||||| |||||||||||||||||||||||||||||||||| |||||| |||||| |||||||||||||||||||||||||||| ||||||||||||| |
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| T |
21373756 |
ctcccaagctagaatagtgaaagaggtgttagagagtttttgtcatgcttttgggttgaaagttaatattcaaaaatttagattcatgtcttctgctaat |
21373855 |
T |
|
| Q |
354 |
atcgcaagaggcaaagtgaataaattttcttctatcgttcatctcactc |
402 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
21373856 |
atcgcaagaggcaaagtgaataaattttcttctatcgttcatttcactc |
21373904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 107 - 219
Target Start/End: Original strand, 21373614 - 21373726
Alignment:
| Q |
107 |
tttaaaaccatgagatttcgctttaaagtttaatctaccatacaaaatgaattttgactttgtcaacaatattcgtcacattgagctctttctaggcaaa |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21373614 |
tttaaaaccatgagatttcgctttaaagtttaatctaccatacaaaatgaattttgactttgtcaacaatattcgtcacattgagctctttctaggcaaa |
21373713 |
T |
|
| Q |
207 |
attactttaagca |
219 |
Q |
| |
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||||||||||||| |
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| T |
21373714 |
attactttaagca |
21373726 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 21372983 - 21373093
Alignment:
| Q |
1 |
agtcgttctgagagaggtaagcgtgtggcttctgcagcaacaccaccaaatacaactcctacccactagtagtacaagttatatgccccactttatttgt |
100 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21372983 |
agtcgttctgagagaggaaagcgtgtggcttctgcagcaacaccaccaaatacaactcctacccactagtagtacaagttatatgccccactttatttgt |
21373082 |
T |
|
| Q |
101 |
ttaaagtttaa |
111 |
Q |
| |
|
||||||||||| |
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| T |
21373083 |
ttaaagtttaa |
21373093 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 21384574 - 21384465
Alignment:
| Q |
1 |
agtcgttctgagagaggtaagcgtgtggcttctgcagcaacaccaccaaatacaactcctacccactagtagtacaagttatatgccccacttta-tttg |
99 |
Q |
| |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| |
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| T |
21384574 |
agtcgttctgagagaggaaagcgtgtggcttctgcagcaacaccaccaaatacaactcctacccactagtagtacaagt--tatgccccactttattttg |
21384477 |
T |
|
| Q |
100 |
tttaaagtttaa |
111 |
Q |
| |
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|||||||||||| |
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|
| T |
21384476 |
tttaaagtttaa |
21384465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 263 - 388
Target Start/End: Complemental strand, 36253228 - 36253104
Alignment:
| Q |
263 |
tagaatagtgaaagaggtgttagagagtttttgctatgcttctgggtttaaagttaatattcaaaaatttagattcaggtcttctgctaatatcgcaaga |
362 |
Q |
| |
|
||||||| ||||||||||| |||| |||||||| |||||||||| || ||||||||||||||||||| |||||||| |||| | ||||||| | | | |
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| T |
36253228 |
tagaatattgaaagaggtggtagaaagtttttgtcatgcttctgg-ttaaaagttaatattcaaaaatctagattcatgtctaatcctaatatttccaaa |
36253130 |
T |
|
| Q |
363 |
ggcaaagtgaataaattttcttctat |
388 |
Q |
| |
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|||||||||||||||| ||||||| |
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|
| T |
36253129 |
aacaaagtgaataaatttgcttctat |
36253104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 94; Significance: 9e-46; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 262 - 395
Target Start/End: Original strand, 54873628 - 54873761
Alignment:
| Q |
262 |
ctagaatagtgaaagaggtgttagagagtttttgctatgcttctgggtttaaagttaatattcaaaaatttagattcaggtcttctgctaatatcgcaag |
361 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| ||||||||||||| |||||||||||||||| || |||||||| |||||||||||||||| | || |
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| T |
54873628 |
ctagaatagtgaaagaggtattagagagtttttgtcatgcttctgggttgaaagttaatattcaaatatctagattcatgtcttctgctaatatctctag |
54873727 |
T |
|
| Q |
362 |
aggcaaagtgaataaattttcttctatcgttcat |
395 |
Q |
| |
|
| |||||||||||||||||||||||||||||||| |
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| T |
54873728 |
aagcaaagtgaataaattttcttctatcgttcat |
54873761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 262 - 395
Target Start/End: Complemental strand, 55429958 - 55429825
Alignment:
| Q |
262 |
ctagaatagtgaaagaggtgttagagagtttttgctatgcttctgggtttaaagttaatattcaaaaatttagattcaggtcttctgctaatatcgcaag |
361 |
Q |
| |
|
||||||||||||||||||| ||| |||||||||| ||||||||||||| ||||||||||||||||||| |||||||| |||| |||||||||| | || |
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| T |
55429958 |
ctagaatagtgaaagaggtcttaaagagtttttgtcatgcttctgggttaaaagttaatattcaaaaatctagattcatatcttatgctaatatctctag |
55429859 |
T |
|
| Q |
362 |
aggcaaagtgaataaattttcttctatcgttcat |
395 |
Q |
| |
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| |||||||||||||||||||||||||||||||| |
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| T |
55429858 |
aagcaaagtgaataaattttcttctatcgttcat |
55429825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 266 - 329
Target Start/End: Original strand, 40583947 - 40584010
Alignment:
| Q |
266 |
aatagtgaaagaggtgttagagagtttttgctatgcttctgggtttaaagttaatattcaaaaa |
329 |
Q |
| |
|
|||| |||||||| ||||||| |||||||| |||||||| |||| |||||||||||||||||| |
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| T |
40583947 |
aataatgaaagagatgttagatagtttttgtaatgcttctcggttaaaagttaatattcaaaaa |
40584010 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 262 - 395
Target Start/End: Original strand, 7020703 - 7020834
Alignment:
| Q |
262 |
ctagaatagtgaaagaggtgttagagagtttttgctatgcttctgggtttaaagttaatattcaaaaatttagattcaggtcttctgctaatatcgcaag |
361 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| ||||||||||||| |||||||||||||| |||| |||||||| |||||||||||||||| | || |
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|
| T |
7020703 |
ctagaatagtgaaagaggtgt--gagagtttttgtcatgcttctgggttgaaagttaatattcagaaatctagattcatgtcttctgctaatatctccag |
7020800 |
T |
|
| Q |
362 |
aggcaaagtgaataaattttcttctatcgttcat |
395 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||| |
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|
| T |
7020801 |
agacaaagtgaataaattttcttctatcgttcat |
7020834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 71; Significance: 5e-32; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 262 - 395
Target Start/End: Complemental strand, 15919070 - 15918936
Alignment:
| Q |
262 |
ctagaatagtgaaagaggtgttagagagtttttgctatgcttctgggtttaaagttaatatt-caaaaatttagattcaggtcttctgctaatatcgcaa |
360 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||| ||||||||||||| |||||||||||| |||||| || ||||| |||||||||||||||| | | |
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| T |
15919070 |
ctagaatagtgaaacaggtgttagagagtttttgtcatgcttctgggttgaaagttaatattaaaaaaatctaaattcatgtcttctgctaatatctcta |
15918971 |
T |
|
| Q |
361 |
gaggcaaagtgaataaattttcttctatcgttcat |
395 |
Q |
| |
|
|| |||||||||||||||||||||||| ||||| |
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|
| T |
15918970 |
gaaaaaaagtgaataaattttcttctatcattcat |
15918936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 262 - 395
Target Start/End: Complemental strand, 37785400 - 37785267
Alignment:
| Q |
262 |
ctagaatagtgaaagaggtgttagagagtttttgctatgcttctgggtttaaagttaatattcaaaaatttagattcaggtcttctgctaatatcgcaag |
361 |
Q |
| |
|
||||||||||||||||||||||| |||| |||| |||||||||| || ||||||||||||||||||| |||||||| || || | |||||||| | || |
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|
| T |
37785400 |
ctagaatagtgaaagaggtgttaaagagattttttcatgcttctggattgaaagttaatattcaaaaatctagattcatgttttatactaatatctctag |
37785301 |
T |
|
| Q |
362 |
aggcaaagtgaataaattttcttctatcgttcat |
395 |
Q |
| |
|
| ||||||||| |||||| |||||| |||||| |
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|
| T |
37785300 |
aaacaaagtgaaaaaatttgtttctattgttcat |
37785267 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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