View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20038_low_5 (Length: 385)
Name: NF20038_low_5
Description: NF20038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20038_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 336; Significance: 0; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 1 - 368
Target Start/End: Original strand, 11645035 - 11645402
Alignment:
| Q |
1 |
catcattgagaaaagaaaatcaaaataaaatgaagggtgtcaaatttagttcaaatttcaatcaaaccatgatctttcttctaattcttgtatcaacttt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
11645035 |
catcattgagaaaagaaaatcaaaataaaatgaagggtgtcaaatttagttcaaattccaatcaaaccatgatctttcttctaattcttgtatcaacttt |
11645134 |
T |
|
| Q |
101 |
ttgtctaagcattgaagtagcattaggacaactcaataaagcaaccttaacattgaacagttttgaaaaaggtggagatggaggagcagcatcagaatgt |
200 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11645135 |
ttgtctaagcattgaagtagcatcaggacaactcaataaagcaaccttaacattgaacagttttgaaaaaggtggagatggaggagcagcatcagaatgt |
11645234 |
T |
|
| Q |
201 |
gacaacaaatttcactccgatgacacacttattgtagcattatcaactgaatatttcaaccatagagagaggtgtttcaaagaaattactatttttggta |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
11645235 |
gacaacaaatttcactccgatgacacacttattgtagcattatcaactgtgtatttcaaccataaagagaggtgtttcaaagaaattactatttttggta |
11645334 |
T |
|
| Q |
301 |
atggtagaagcgtgaatgccatggttgttgatgagtgtgcgtgtggaaagaatattgttgatggttct |
368 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| |
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| T |
11645335 |
atggtagaagcgtgaatgccatggttgttgatgagtgtaagtgtggaaacaatattgttgatggttct |
11645402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 136 - 339
Target Start/End: Original strand, 11622095 - 11622298
Alignment:
| Q |
136 |
ataaagcaaccttaacattgaacagttttgaaaaaggtggagatggaggagcagcatcagaatgtgacaacaaatttcactccgatgacacacttattgt |
235 |
Q |
| |
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||||||||| ||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| || | |||||| |||| |
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| T |
11622095 |
ataaagcaatcttaacattgaacagctttgaaaaaggtggagatggaggagcaccatcagaatgtgacaacaagtttcactctgacaagacacttgttgt |
11622194 |
T |
|
| Q |
236 |
agcattatcaactgaatatttcaaccatagagagaggtgtttcaaagaaattactatttttggtaatggtagaagcgtgaatgccatggttgttgatgag |
335 |
Q |
| |
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||||||||||| || | |||||||||| | |||||||||| ||||| |||||||| ||||||||||||| ||| || ||||||| ||||||||||||| |
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| T |
11622195 |
agcattatcaagtgctttgttcaaccataaaaagaggtgtttgaaagagattactatatttggtaatggtaaaagggttaatgccaaggttgttgatgag |
11622294 |
T |
|
| Q |
336 |
tgtg |
339 |
Q |
| |
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|||| |
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|
| T |
11622295 |
tgtg |
11622298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 136 - 339
Target Start/End: Original strand, 11640658 - 11640861
Alignment:
| Q |
136 |
ataaagcaaccttaacattgaacagttttgaaaaaggtggagatggaggagcagcatcagaatgtgacaacaaatttcactccgatgacacacttattgt |
235 |
Q |
| |
|
||||||||| ||||||||||||||| ||||||||||||||||||||||||| | ||||||||||||||||||| |||||||| || | |||||| |||| |
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|
| T |
11640658 |
ataaagcaatcttaacattgaacagctttgaaaaaggtggagatggaggaggaccatcagaatgtgacaacaagtttcactctgacaagacacttgttgt |
11640757 |
T |
|
| Q |
236 |
agcattatcaactgaatatttcaaccatagagagaggtgtttcaaagaaattactatttttggtaatggtagaagcgtgaatgccatggttgttgatgag |
335 |
Q |
| |
|
|||||||||||||| | |||||||| | |||||||| | ||||| |||||||| ||||||||||||| ||| || ||||||| ||||||||||||| |
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|
| T |
11640758 |
agcattatcaactgttttgttcaaccacaagaagaggtgtctgaaagagattactatatttggtaatggtaaaagggttaatgccaaggttgttgatgag |
11640857 |
T |
|
| Q |
336 |
tgtg |
339 |
Q |
| |
|
|||| |
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|
| T |
11640858 |
tgtg |
11640861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 138 - 339
Target Start/End: Original strand, 11654713 - 11654914
Alignment:
| Q |
138 |
aaagcaaccttaacattgaacagttttgaaaaaggtggagatggaggagcagcatcagaatgtgacaacaaatttcactccgatgacacacttattgtag |
237 |
Q |
| |
|
||||||||| ||||| ||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| || | |||| | |||||| |
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|
| T |
11654713 |
aaagcaaccctaacactgaacagctttgaaaaaggtggagatggaggagcaccatcagaatgtgacaacaagtttcactctgacaaaacacctgttgtag |
11654812 |
T |
|
| Q |
238 |
cattatcaactgaatatttcaaccatagagagaggtgtttcaaagaaattactatttttggtaatggtagaagcgtgaatgccatggttgttgatgagtg |
337 |
Q |
| |
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|||||||||||| | |||||| ||| |||||||||| ||| | |||||||| ||||| ||||||| || || ||||| ||||||||||||||||| |
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|
| T |
11654813 |
cattatcaactggttggttcaacaataataagaggtgtttgaaaaagattactatatttggaaatggtaaaaaggttaatgctatggttgttgatgagtg |
11654912 |
T |
|
| Q |
338 |
tg |
339 |
Q |
| |
|
|| |
|
|
| T |
11654913 |
tg |
11654914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 9 - 117
Target Start/End: Original strand, 11654461 - 11654569
Alignment:
| Q |
9 |
agaaaagaaaatcaaaataaaatgaagggtgtcaaatttagttcaaatttcaatcaaaccatgatctttcttctaattcttgtatcaactttttgtctaa |
108 |
Q |
| |
|
|||||| ||||| ||||||||||||||||||||||| |||||| |||||||| ||||||||| ||||||||||||||||||||||||||||| || |||| |
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|
| T |
11654461 |
agaaaacaaaataaaaataaaatgaagggtgtcaaaattagtttaaatttcattcaaaccataatctttcttctaattcttgtatcaactttatgcctaa |
11654560 |
T |
|
| Q |
109 |
gcattgaag |
117 |
Q |
| |
|
||||||||| |
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|
| T |
11654561 |
gcattgaag |
11654569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 24 - 117
Target Start/End: Original strand, 11621953 - 11622046
Alignment:
| Q |
24 |
aataaaatgaagggtgtcaaatttagttcaaatttcaatcaaaccatgatctttcttctaattcttgtatcaactttttgtctaagcattgaag |
117 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||| |||||||||| || |||||||||| |||||||||||||| || ||||||||||| |
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| T |
11621953 |
aataaaatgaagggtgtcaaaattagttcaaatttcattcaaaccatggtcattcttctaatccttgtatcaactttgtgctcaagcattgaag |
11622046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 24 - 117
Target Start/End: Original strand, 11640516 - 11640609
Alignment:
| Q |
24 |
aataaaatgaagggtgtcaaatttagttcaaatttcaatcaaaccatgatctttcttctaattcttgtatcaactttttgtctaagcattgaag |
117 |
Q |
| |
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||||||||||||||||||||| | ||||||| || || |||||| |||||| ||||| |||| |||||||||||||| || ||||||||||| |
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| T |
11640516 |
aataaaatgaagggtgtcaaaatgagttcaagttccattcaaacaatgatcattcttgtaatccttgtatcaactttgtgctcaagcattgaag |
11640609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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