View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20038_low_7 (Length: 362)
Name: NF20038_low_7
Description: NF20038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20038_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 306; Significance: 1e-172; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 12 - 343
Target Start/End: Original strand, 8514942 - 8515272
Alignment:
| Q |
12 |
agagagataatcatcagtaagcctaaaaacccttaaaaaactttcggt-aagtatctgatcttcttgtaaactttaggtgcaacccggggatcatagcca |
110 |
Q |
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| T |
8514942 |
agagagataatcatcagtaagcctaaaaacccttaaaaaactttcggtcaagtatctgatcttcttgtaaactttaggtgcaacccggggatcatagcca |
8515041 |
T |
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| Q |
111 |
gctgacgcaagtaatagaagtccaatgtaatctgcttccatttccatcctgaaaaattgtgaatgaatttgtttatgacactataatatgtaaccgtgaa |
210 |
Q |
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| T |
8515042 |
gctgacgcaagtaatagaagtccaatgtaatctgcttccatttccatcctgtaaaattgtgaatgaatttgtttatgtcactataatatgtaaccgtgaa |
8515141 |
T |
|
| Q |
211 |
aaatatacatatatagatattaccatcattgacttttctataatcatattgcatcacaaggcttaaaattacacaattttccaattcaatataatagtat |
310 |
Q |
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| T |
8515142 |
aaatatac--atatagatattaccatcattgacttttctataatcatattgcatcacaaggcttaaaattacacaattttccaattcaatataatagtat |
8515239 |
T |
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| Q |
311 |
tgttttaatttcgcttttattcacaatgtcatg |
343 |
Q |
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| T |
8515240 |
tgttttaatttcgcttttattcacaatgtcatg |
8515272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 97 - 343
Target Start/End: Original strand, 8488195 - 8488439
Alignment:
| Q |
97 |
ggggatcatagccagctgacgcaagtaatagaagtccaatgtaatctgcttccatttccatcctgaaaaattgtgaatgaatttgtttatgacactataa |
196 |
Q |
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| T |
8488195 |
ggggatcatagccagctgaagcaagtaatagaagtccaatgtaatctgcttccatttccatcctgtaaaattgtgaatgaatttgtttatgtcactataa |
8488294 |
T |
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| Q |
197 |
tatgtaaccgtgaaaaatatacatatatagatattaccatcattgacttttctataatcatattgcatcacaaggcttaaaattacacaattttccaatt |
296 |
Q |
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| T |
8488295 |
tatgtaaccgtgaaaaatatacatat--agatattaccatcattgacttttctataatcatattgcatcacaaggcttaaaattacacaattttccaatt |
8488392 |
T |
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| Q |
297 |
caatataatagtattgttttaatttcgcttttattcacaatgtcatg |
343 |
Q |
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| T |
8488393 |
caatataatagtattgttttaatttcgcttttattcacaatgtcatg |
8488439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 46; Significance: 4e-17; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 81 - 154
Target Start/End: Original strand, 23906460 - 23906533
Alignment:
| Q |
81 |
actttaggtgcaacccggggatcatagccagctgacgcaagtaatagaagtccaatgtaatctgcttccatttc |
154 |
Q |
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| T |
23906460 |
actttaggtgccacccggggatcatagccagccgatgcaagtaatagaagccgaatgtaatcagcttcaatttc |
23906533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 81 - 171
Target Start/End: Original strand, 21956555 - 21956645
Alignment:
| Q |
81 |
actttaggtgcaacccggggatcatagccagctgacgcaagtaatagaagtccaatgtaatctgcttccatttccatcctgaaaaattgtg |
171 |
Q |
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| T |
21956555 |
actttaggtgccccacgtggatcatagccggcagatgcaagtaatagaagaccaatataatcagcttcaatttccatcctgaaaagttgtg |
21956645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 99 - 163
Target Start/End: Original strand, 29939572 - 29939636
Alignment:
| Q |
99 |
ggatcatagccagctgacgcaagtaatagaagtccaatgtaatctgcttccatttccatcctgaa |
163 |
Q |
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| T |
29939572 |
ggatcatagcctgctgatgcaactaatagaagtccaatgtaatcagcttctttttccatcctgaa |
29939636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 99 - 161
Target Start/End: Complemental strand, 30124556 - 30124494
Alignment:
| Q |
99 |
ggatcatagccagctgacgcaagtaatagaagtccaatgtaatctgcttccatttccatcctg |
161 |
Q |
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| T |
30124556 |
ggatcatagcctgctgatgcgactaatagaagtccaatgtaatcagcttctatctccatcctg |
30124494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 71 - 171
Target Start/End: Complemental strand, 907868 - 907768
Alignment:
| Q |
71 |
cttcttgtaaactttaggtgcaacccggggatcatagccagctgacgcaagtaatagaagtccaatgtaatctgcttccatttccatcctgaaaaattgt |
170 |
Q |
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| T |
907868 |
cttctcgtagactttaggtgccacacgtgggtcataaccggcagatgccactaatagaagaccaatgtaatcagcttcaatttccatcctgaaaaattgt |
907769 |
T |
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| Q |
171 |
g |
171 |
Q |
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| T |
907768 |
g |
907768 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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