View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20039_high_1 (Length: 496)
Name: NF20039_high_1
Description: NF20039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20039_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 400; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 18 - 492
Target Start/End: Complemental strand, 54814690 - 54814211
Alignment:
| Q |
18 |
gtttcatccatctaatctaataaacataacata-----tgatgatcattaatttttgggtatgcatatgatgtttcatattttctgtttccatttagatc |
112 |
Q |
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| T |
54814690 |
gtttcatccatctaatctaataaacataacataacatatgatgatcattaatttttgggtatgcatatgatgtttcatattttctgtttccatttagatc |
54814591 |
T |
|
| Q |
113 |
attttcttttgaataatgtatgagattatatcaatatttatgcacgaggttaataaatcgtactgcaaaatgaacgttaaaaggttgtgttccaaacaat |
212 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
54814590 |
attttcttttgactaatgtatgagattatatcaatatttatgcacgaggttaataaatcttactgcaaaatgaacgttaaaaggttgtgttccaaacaat |
54814491 |
T |
|
| Q |
213 |
gaaaaatatcataatgaaggccttttgttccaattaatattttcattgtgattctaattccatgttttgattgacattgattttgaattgtgacaggnnn |
312 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54814490 |
gaaaaatatcataatgaaggccttgtgttccaattaatattttcattgtaattctaattccatgttttgattgacattgattttgaattgtgacaggaaa |
54814391 |
T |
|
| Q |
313 |
nnnnnnnnntgctcagaaggttgtttctgttttcgtttttgcttcattcaacgttggcccaaaaacctgccgttcctcatcatcatcctatagctccaca |
412 |
Q |
| |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54814390 |
aaataaaaatgctcagaaggttgtttctgttttcatttttgcttcattcaacgttggcccaaaaacctgccgttcctcatcatcatcctatagctccaca |
54814291 |
T |
|
| Q |
413 |
tcaacctgtagtacctaatcctatccctgtcaagaaatggtcaacattaagtggttggtaatcctaaacctttgcttctc |
492 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
54814290 |
tcaacctgtagtacctaatcctatccctgtcaagaaatggtcaacattaagtggttggtaatcctaaacctttgtttctc |
54814211 |
T |
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