View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20039_high_2 (Length: 482)
Name: NF20039_high_2
Description: NF20039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20039_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 308; Significance: 1e-173; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 160 - 467
Target Start/End: Complemental strand, 9278984 - 9278677
Alignment:
| Q |
160 |
gaaaaatccatttagtgaggttcactttgcaacatatgtaacatgaatagagtttaacttccaactttccaattaaaacatgagtagttaattgtattgc |
259 |
Q |
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| T |
9278984 |
gaaaaatccatttagtgaggttcactttgcaacatatgtaacatgaatagagtttaacttccaactttccaattaaaacatgagtagttaattgtattgc |
9278885 |
T |
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| Q |
260 |
tggtggaggacgtgacaagtgacaacaacattttatattgaagtcacccaacaatccatttggcatcataatataaaggatacatataatagtgttctct |
359 |
Q |
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| T |
9278884 |
tggtggaggacgtgacaagtgacaacaacattttatattgaagtcacccaacaatccatttggcatcataatataaaggatacatataatagtgttctct |
9278785 |
T |
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| Q |
360 |
ccttagtccaattcccttctccacacatgactagaagatcaagaaacactttattagtatatatataggcataaacccttttttactatgacgaaaaggg |
459 |
Q |
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| T |
9278784 |
ccttagtccaattcccttctccacacatgactagaagatcaagaaacactttattagtatatatataggcataaacccttttttactatgacgaaaaggg |
9278685 |
T |
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| Q |
460 |
aaactatg |
467 |
Q |
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| T |
9278684 |
aaactatg |
9278677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 13 - 160
Target Start/End: Complemental strand, 9279171 - 9279022
Alignment:
| Q |
13 |
aatatctcacgaatattgcatctatgat--gccatatcttgaattctatagctcaatgaagtccacaaaattttgcaaagacaagttttaataattaacc |
110 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9279171 |
aatatctcacgaatattgcatctatgatttgccatatcttgaattctatagctcaatgaagtccacaaaattttgcaaagacaagttttaataattaacc |
9279072 |
T |
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| Q |
111 |
gaccttcatgaatgaaacaattcaaaaggtatcatgaacagttgattagg |
160 |
Q |
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| T |
9279071 |
gaccttcatgaatgaaacaattcaaaaggtatcatgaacagttgattagg |
9279022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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