View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20039_high_4 (Length: 331)

Name: NF20039_high_4
Description: NF20039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20039_high_4
NF20039_high_4
[»] chr3 (6 HSPs)
chr3 (23-305)||(54562897-54563179)
chr3 (65-290)||(19822333-19822558)
chr3 (28-293)||(44493658-44493923)
chr3 (72-221)||(12528007-12528156)
chr3 (23-148)||(14484153-14484278)
chr3 (178-290)||(4481391-4481503)
[»] chr5 (1 HSPs)
chr5 (23-302)||(22787432-22787711)
[»] chr8 (2 HSPs)
chr8 (73-221)||(13701891-13702039)
chr8 (43-209)||(13813004-13813170)
[»] chr4 (1 HSPs)
chr4 (23-297)||(27011061-27011335)
[»] scaffold0381 (1 HSPs)
scaffold0381 (136-297)||(8451-8612)
[»] chr7 (2 HSPs)
chr7 (178-238)||(8863719-8863779)
chr7 (45-97)||(13639833-13639885)
[»] chr1 (2 HSPs)
chr1 (137-238)||(17177407-17177508)
chr1 (178-297)||(38490404-38490523)


Alignment Details
Target: chr3 (Bit Score: 267; Significance: 1e-149; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 23 - 305
Target Start/End: Original strand, 54562897 - 54563179
Alignment:
Q  23 tccaccttgccccacctcgcacaatgaaacgagcgcgtaaggtactacgccaaacaaaactcggattatgaccaacagtggcatcaagataggacttaga 122  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  54562897 tccaccttgccccacctcgcacaatgaaacgagcgcgtaagatactacgccaaacaaaactcggattatgaccaacagtggcatcaagataggatttaga 54562996  T
Q  123 ggggaagtaccgagctttaaaaatacgagaaactaaagaatgaggctctgttaggaatttccacccttgcttgcccaacatcgcaaggttgaaagccgat 222  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54562997 ggggaagtaccgagctttaaaaatacgagaaactaaagagtgaggctctgttaggaatttccacccttgcttgcccaacatcgcaaggttgaaagccgat 54563096  T
Q  223 aagtccttgaatcccaaacccctatggattttatgaatcgatagcttttcccaactcaaccaattaatgcctctacgagtatt 305  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54563097 aagtccttgaatcccaaacccccatggattttatgaatcgatagcttttcccaactcaaccaattaatgcctctacgagtatt 54563179  T

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Target: chr3; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 65 - 290
Target Start/End: Original strand, 19822333 - 19822558
Alignment:
Q  65 tactacgccaaacaaaactcggattatgaccaacagtggcatcaagataggacttagaggggaagtaccgagctttaaaaatacgagaaactaaagaatg 164  Q
    |||||||||| ||||||||||||||||| |||| ||| ||   ||||||||| ||||| || |||||||  || ||||| ||||||||||| | ||| |     
T  19822333 tactacgccatacaaaactcggattatggccaatagtagcggtaagataggatttagatggaaagtaccttgccttaaagatacgagaaaccagagagtt 19822432  T
Q  165 aggctctgttaggaatttccacccttgcttgcccaacatcgcaaggttgaaagccgataagtccttgaatcccaaacccctatggattttatgaatcgat 264  Q
     |||||||| |  || ||||| || |||||||||||||| || |  ||||||||||||||||| || || |||| ||| | ||| | |||||  || ||     
T  19822433 tggctctgtcaaaaacttccatccctgcttgcccaacatagctaaattgaaagccgataagtctttaaagcccataccaccatgaactttatacatagaa 19822532  T
Q  265 agcttttcccaactcaaccaattaat 290  Q
    |||||||||||||||| ||| |||||    
T  19822533 agcttttcccaactcagccagttaat 19822558  T

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Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 28 - 293
Target Start/End: Complemental strand, 44493923 - 44493658
Alignment:
Q  28 cttgccccacctcgcacaatgaaacgagcgcgtaaggtactacgccaaacaaaactcggattatgaccaacagtggcatcaagataggacttagagggga 127  Q
    ||||||||||| |||||||| ||||| ||||| |   |||||||||| ||| ||||||| || ||||| |  || ||||  | ||| || ||||| || |    
T  44493923 cttgccccaccgcgcacaataaaacgggcgcgaagtatactacgccacacataactcgggttgtgacctatggtagcattcaaataagatttagacggaa 44493824  T
Q  128 agtaccgagctttaaaaatacgagaaactaaagaatgaggctctgttaggaatttccacccttgcttgcccaacatcgcaaggttgaaagccgataagtc 227  Q
    |||||| ||| ||||| |||| ||| || |  || |||||||| || || |||||||| || ||||| |||||||||||||| |||||||| || |  ||    
T  44493823 agtacctagccttaaagatacaagagacaagcgagtgaggctccgtaagaaatttccagccctgcttacccaacatcgcaagattgaaagctgagagatc 44493724  T
Q  228 cttgaatcccaaacccctatggattttatgaatcgatagcttttcccaactcaaccaattaatgcc 293  Q
     || || ||||  || | |||  ||||||| |||||||  ||||||||||||| |||||| |||||    
T  44493723 tttaaaacccatgccaccatgtgttttatgcatcgataatttttcccaactcatccaattcatgcc 44493658  T

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Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 72 - 221
Target Start/End: Original strand, 12528007 - 12528156
Alignment:
Q  72 ccaaacaaaactcggattatgaccaacagtggcatcaagataggacttagaggggaagtaccgagctttaaaaatacgagaaactaaagaatgaggctct 171  Q
    ||||||| |||||||||| |||||||   ||||||  ||| |||| |||   || ||||| || | |||||||||||||||||| |  || ||||||||     
T  12528007 ccaaacataactcggattgtgaccaatgttggcattgagaaaggatttattcggaaagtatcgggatttaaaaatacgagaaacgagggattgaggctcc 12528106  T
Q  172 gttaggaatttccacccttgcttgcccaacatcgcaaggttgaaagccga 221  Q
    | ||| | ||||||| ||||||| || ||||||||||| |||||||||||    
T  12528107 gatagaagtttccacgcttgcttacctaacatcgcaagattgaaagccga 12528156  T

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Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 23 - 148
Target Start/End: Complemental strand, 14484278 - 14484153
Alignment:
Q  23 tccaccttgccccacctcgcacaatgaaacgagcgcgtaaggtactacgccaaacaaaactcggattatgaccaacagtggcatcaagataggacttaga 122  Q
    |||||||||| || ||||| ||||||||||| |  |||||  |||| |||| |||| |||||||||| |||||||  || |||| |||| |||| |||||    
T  14484278 tccaccttgctccgcctcggacaatgaaacgggaacgtaaaatactccgcccaacataactcggattgtgaccaatggtagcatgaagaaaggatttaga 14484179  T
Q  123 ggggaagtaccgagctttaaaaatac 148  Q
     || ||||| | ||||||||||||||    
T  14484178 tggaaagtatctagctttaaaaatac 14484153  T

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Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 178 - 290
Target Start/End: Original strand, 4481391 - 4481503
Alignment:
Q  178 aatttccacccttgcttgcccaacatcgcaaggttgaaagccgataagtccttgaatcccaaacccctatggattttatgaatcgatagcttttcccaac 277  Q
    ||||||||||||||||| |||||||| ||||| ||||||||||| |  |||||||| ||||  || | ||||   ||||| || |||| |||||||||||    
T  4481391 aatttccacccttgctttcccaacattgcaagattgaaagccgaaagatccttgaaccccattccaccatgggacttatgcatggataacttttcccaac 4481490  T
Q  278 tcaaccaattaat 290  Q
    | ||||| |||||    
T  4481491 ttaaccagttaat 4481503  T

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Target: chr5 (Bit Score: 152; Significance: 2e-80; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 23 - 302
Target Start/End: Original strand, 22787432 - 22787711
Alignment:
Q  23 tccaccttgccccacctcgcacaatgaaacgagcgcgtaaggtactacgccaaacaaaactcggattatgaccaacagtggcatcaagataggacttaga 122  Q
    ||||||| ||||| |||||||| |||||| |||||| |||| ||||||||||||||||||| |||||||||||||| ||||| ||||||||||| |||||    
T  22787432 tccacctagccccgcctcgcacgatgaaaggagcgcttaagatactacgccaaacaaaacttggattatgaccaacggtggcgtcaagataggatttaga 22787531  T
Q  123 ggggaagtaccgagctttaaaaatacgagaaactaaagaatgaggctctgttaggaatttccacccttgcttgcccaacatcgcaaggttgaaagccgat 222  Q
     |||||||||||||||||||||||||||||||| | ||| ||||| |||||||| ||||| ||  |||||||||||||||||||||| |||||||| ||     
T  22787532 agggaagtaccgagctttaaaaatacgagaaaccagagattgaggttctgttagaaattttcattcttgcttgcccaacatcgcaagattgaaagctgag 22787631  T
Q  223 aagtccttgaatcccaaacccctatggattttatgaatcgatagcttttcccaactcaaccaattaatgcctctacgagt 302  Q
    | ||||||||| ||||||||||| ||  |||||||||||||||| |||||||||||||||||| | || |||||| ||||    
T  22787632 aggtccttgaaacccaaacccctctgagttttatgaatcgatagtttttcccaactcaaccaagttatacctctatgagt 22787711  T

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Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 73 - 221
Target Start/End: Original strand, 13701891 - 13702039
Alignment:
Q  73 caaacaaaactcggattatgaccaacagtggcatcaagataggacttagaggggaagtaccgagctttaaaaatacgagaaactaaagaatgaggctctg 172  Q
    |||||| |||||||||| |||||||   ||||||  ||| |||| ||||  || ||||| || |||||||||||||||||||| |  || |||||||| |    
T  13701891 caaacataactcggattgtgaccaatgttggcattgagaaaggatttagtcggaaagtatcgggctttaaaaatacgagaaacgagggattgaggctccg 13701990  T
Q  173 ttaggaatttccacccttgcttgcccaacatcgcaaggttgaaagccga 221  Q
     ||| ||||| ||| ||||||| || ||||||||||| |||||||||||    
T  13701991 atagaaattttcacgcttgcttacctaacatcgcaagattgaaagccga 13702039  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 43 - 209
Target Start/End: Original strand, 13813004 - 13813170
Alignment:
Q  43 acaatgaaacgagcgcgtaaggtactacgccaaacaaaactcggattatgaccaacagtggcatcaagataggacttagaggggaagtaccgagctttaa 142  Q
    ||||||||||||||| ||||| |||| ||||| ||| | ||||| ||||| || |   ||||||  ||| ||||  |||| || |||||   ||| ||||    
T  13813004 acaatgaaacgagcgtgtaagatactccgccacacatagctcgggttatggcctattttggcattgagaaaggatgtagatggaaagtatttagccttaa 13813103  T
Q  143 aaatacgagaaactaaagaatgaggctctgttaggaatttccacccttgcttgcccaacatcgcaag 209  Q
    ||||||| |  || | |||||||||||| |  ||||||||||||||||| || ||||||||||||||    
T  13813104 aaatacgcgtgacaagagaatgaggctccgaaaggaatttccacccttgttttcccaacatcgcaag 13813170  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 23 - 297
Target Start/End: Original strand, 27011061 - 27011335
Alignment:
Q  23 tccaccttgccccacctcgcacaatgaaacgagcgcgtaaggtactacgccaaacaaaactcggattatgaccaacagtggcatcaagataggacttaga 122  Q
    |||| ||||| ||||| |||||||| || || || |||||  |||| ||||||||| | |||||||| ||||| |   ||||||  ||| ||||  |||     
T  27011061 tccatcttgctccaccacgcacaataaagcgggcacgtaaaatactccgccaaacatagctcggattgtgacctatgttggcattgagaaaggatctagt 27011160  T
Q  123 ggggaagtaccgagctttaaaaatacgagaaactaaagaatgaggctctgttaggaatttccacccttgcttgcccaacatcgcaaggttgaaagccgat 222  Q
     || || || || |||||||||||||||||||| |  || |||||||| |  || ||||||||| ||||||| || ||||||||||| |||||||| ||     
T  27011161 cggaaaatatcgggctttaaaaatacgagaaacgagggattgaggctccgaaagaaatttccacgcttgcttacctaacatcgcaagattgaaagctgag 27011260  T
Q  223 aagtccttgaatcccaaacccctatggattttatgaatcgatagcttttcccaactcaaccaattaatgcctcta 297  Q
    |  |||||||| ||||  ||||| ||  ||||||| || || || || |||||||| |||||||| || ||||||    
T  27011261 agatccttgaaacccattcccctgtgagttttatgcatggacagtttctcccaacttaaccaatttatacctcta 27011335  T

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Target: scaffold0381 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: scaffold0381
Description:

Target: scaffold0381; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 136 - 297
Target Start/End: Complemental strand, 8612 - 8451
Alignment:
Q  136 gctttaaaaatacgagaaactaaagaatgaggctctgttaggaatttccacccttgcttgcccaacatcgcaaggttgaaagccgataagtccttgaatc 235  Q
    |||||||||||||||||||| |  || |||||||| |  || ||||||||| ||||||| || ||||||||||| |||||||| || |  |||||||| |    
T  8612 gctttaaaaatacgagaaacgagggattgaggctccgaaagaaatttccacgcttgcttacctaacatcgcaagattgaaagctgagagatccttgaaac 8513  T
Q  236 ccaaacccctatggattttatgaatcgatagcttttcccaactcaaccaattaatgcctcta 297  Q
    |||  ||||| ||  ||||||| || || || || |||||||| |||||||| || ||||||    
T  8512 ccattcccctgtgagttttatgcatggacagtttctcccaacttaaccaatttatacctcta 8451  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 178 - 238
Target Start/End: Original strand, 8863719 - 8863779
Alignment:
Q  178 aatttccacccttgcttgcccaacatcgcaaggttgaaagccgataagtccttgaatccca 238  Q
    ||||||||||||||||| |||||||||||||| ||||||||||| |  |||||||| ||||    
T  8863719 aatttccacccttgctttcccaacatcgcaagattgaaagccgaaagatccttgaacccca 8863779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 97
Target Start/End: Original strand, 13639833 - 13639885
Alignment:
Q  45 aatgaaacgagcgcgtaaggtactacgccaaacaaaactcggattatgaccaa 97  Q
    |||||||||||| |||||| |||||||||||||| ||||||| || |||||||    
T  13639833 aatgaaacgagctcgtaagatactacgccaaacataactcgggttgtgaccaa 13639885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 137 - 238
Target Start/End: Complemental strand, 17177508 - 17177407
Alignment:
Q  137 ctttaaaaatacgagaaactaaagaatgaggctctgttaggaatttccacccttgcttgcccaacatcgcaaggttgaaagccgataagtccttgaatcc 236  Q
    ||||||||||||||||||| |  || |||||||| |  || ||||||||| ||||||| || ||||||||||| ||||| ||||| |  |||||||| ||    
T  17177508 ctttaaaaatacgagaaacgagggattgaggctccgaaagaaatttccacgcttgcttacctaacatcgcaagattgaacgccgagagatccttgaaacc 17177409  T
Q  237 ca 238  Q
    ||    
T  17177408 ca 17177407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 178 - 297
Target Start/End: Original strand, 38490404 - 38490523
Alignment:
Q  178 aatttccacccttgcttgcccaacatcgcaaggttgaaagccgataagtccttgaatcccaaacccctatggattttatgaatcgatagcttttcccaac 277  Q
    |||||||| |||||||| || | ||||||||| || || || ||||| |||||||| || | ||| | ||  || || || ||||| |||||||||||||    
T  38490404 aatttccaaccttgctttcctagcatcgcaagattaaaggcagataaatccttgaaaccaagaccaccattaatcttgtgcatcgaaagcttttcccaac 38490503  T
Q  278 tcaaccaattaatgcctcta 297  Q
    |||||||||| || ||||||    
T  38490504 tcaaccaatttatacctcta 38490523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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