View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20039_low_3 (Length: 359)
Name: NF20039_low_3
Description: NF20039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20039_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 148; Significance: 5e-78; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 164 - 332
Target Start/End: Complemental strand, 37885244 - 37885074
Alignment:
| Q |
164 |
ttttctttgtcaatggtgacaagtttgagttatccaatgttgacccatcactccctttgcttgagttcttgcacactcaaactcaattcaagagtgttaa |
263 |
Q |
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| T |
37885244 |
ttttctgtgtcaatggtgacaagtttgagttatccaatgttgacccatcactccctttgcttgagttcttgcacactcaaactcagttcaagggtgttaa |
37885145 |
T |
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| Q |
264 |
attgtggtgaaggt--atattcatcatatatattttattaaattacaaataaaaactaatctccgatcata |
332 |
Q |
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| T |
37885144 |
attgtggtgaaggtatatattcatcatatatattttattaaattacaaataaaaactaatctccgatcata |
37885074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 43 - 196
Target Start/End: Complemental strand, 37885405 - 37885244
Alignment:
| Q |
43 |
ctttttcttacaaaaataatgaa------ccttagccagcaataactgaaacacaaaaatagacaagagtttgaaagttagtgaagtacggaagtgaaga |
136 |
Q |
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| T |
37885405 |
ctttttcttacaaaaataatgaaggagaaccttagccagttataactgaaacacaaaaatagac--gagtttgaaagttagtgaagtacggaagtgaaga |
37885308 |
T |
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| Q |
137 |
agagtaagaagaatcaaacaaatttggttttctttg----tcaatggtgacaagtttgagttat |
196 |
Q |
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| T |
37885307 |
agagtaagaagaatcaaacaaatttggttttctgtgtcaatcaatggtgacaagtttgagttat |
37885244 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 146 - 281
Target Start/End: Complemental strand, 37880801 - 37880661
Alignment:
| Q |
146 |
agaatcaaacaaatttggttttctttgtcaatggtgacaagtttgagttatccaatgttgacccatcactccctttgcttgagttcttgcacactcaaac |
245 |
Q |
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| T |
37880801 |
agaatcaaacaagtttgattttctgtgtcaatggtgaaaagtttgagttatccaaagttgatccttcaaccactttgcttgagtttttgcgtactcaaac |
37880702 |
T |
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| Q |
246 |
tcaattcaagagtgttaaa-----ttgtggtgaaggtatat |
281 |
Q |
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| T |
37880701 |
tcaattcaagagtgttaaactcggttgtggtgaaggtatat |
37880661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 114 - 285
Target Start/End: Complemental strand, 37865290 - 37865111
Alignment:
| Q |
114 |
ttagtgaagtacggaagtgaagaagagtaagaagaatcaaacaaa---tttggttttctttgtcaatggtgacaagtttgagttatccaatgttgaccca |
210 |
Q |
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| T |
37865290 |
ttagtgaagtatggaagtgaataagagtgagaaaaatcaaacaacaagtttgattttttgtgttaatggtgaaaaatttgagctatccaaagttgaccca |
37865191 |
T |
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| Q |
211 |
tcactccctttgcttgagttcttgcacactcaaactcaattcaagagtgttaaa-----ttgtggtgaaggtatattcat |
285 |
Q |
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| T |
37865190 |
tcaaccactttgattgaattcttgcgtactcaaactcgcttcaagagtgttaaactcggttgtggtgaaggtataatcat |
37865111 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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