View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20040_high_4 (Length: 313)
Name: NF20040_high_4
Description: NF20040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20040_high_4 |
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| [»] chr1 (7 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 244; Significance: 1e-135; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 19 - 313
Target Start/End: Original strand, 23649660 - 23649955
Alignment:
| Q |
19 |
ctaaaataataatgaacaaaatgggctcaatatcccaagtctagaaacaatcccaaccaaaa-cataatggcctatgtgcatcaacactcaagagcttgc |
117 |
Q |
| |
|
||||||||||||||||||||||||| || ||||||||||||||||||||||||||| ||||| |||||| |||||||||||||||||| ||||||||| |
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| T |
23649660 |
ctaaaataataatgaacaaaatgggttcgatatcccaagtctagaaacaatcccaaacaaaaacataatatcctatgtgcatcaacactatagagcttgc |
23649759 |
T |
|
| Q |
118 |
atcttaataaaaacaataaagaaaacaaaattgcatcttcacatggttctaaagtcaaaatctaaatcctgaaagatagatgtagtacatggttaactta |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23649760 |
atcttaataaaaacaataaagaaaacaaaattgcatcttcacatggttctaaagtcaaaatctaaatcctgaaagatagatgtagtacatggttaactta |
23649859 |
T |
|
| Q |
218 |
aattaattcaaccaagtgcagaaaatacagtgtattaataatttaacatggacaacattgaacaaacatagacaaagacaacaaagtaagacaatc |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||| |||||||| |||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
23649860 |
aattaattcaaccaagtgcagaaaatacagtgtaataataattaaacatggaaaacattgaacaaacttagacaaagacaacaaagtaagacaatc |
23649955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 19 - 313
Target Start/End: Original strand, 23735285 - 23735580
Alignment:
| Q |
19 |
ctaaaataataatgaacaaaatgggctcaatatcccaagtctagaaacaatcccaaccaaaa-cataatggcctatgtgcatcaacactcaagagcttgc |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| |||||| || ||||||||||||||| ||||||| |
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| T |
23735285 |
ctaaaataataatgaacaaaatgggctcaatatgccaagtctagaaacaatcccaaacaaaaacataatatccaatgtgcatcaacactatcaagcttgc |
23735384 |
T |
|
| Q |
118 |
atcttaataaaaacaataaagaaaacaaaattgcatcttcacatggttctaaagtcaaaatctaaatcctgaaagatagatgtagtacatggttaactta |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
23735385 |
atcttaataaaaacaataaagaaaacaaaattgcatcttcacatggttctaaagtcaaaatctaaatcctgaaagatagatgtagtacatggttaactta |
23735484 |
T |
|
| Q |
218 |
aattaattcaaccaagtgcagaaaatacagtgtattaataatttaacatggacaacattgaacaaacatagacaaagacaacaaagtaagacaatc |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
23735485 |
aattaattcaaccaagtgcagaaaatacagtgtattaataatttaacatggataacattgaacaaacttagacaaagacaacaaagtaagacaatc |
23735580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 19 - 313
Target Start/End: Original strand, 23618318 - 23618609
Alignment:
| Q |
19 |
ctaaaataataatgaacaaaatgggctcaatatcccaagtctagaaacaatcccaaccaaaa-cataatggcctatgtgcatcaacactcaagagcttgc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||| ||||||| ||||| |||||| |||||||||||||||||| ||||||||| |
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|
| T |
23618318 |
ctaaaataataatgaacaaaatgggctc----tcccaagtctagaaactatcccaaacaaaaacataatatcctatgtgcatcaacactatagagcttgc |
23618413 |
T |
|
| Q |
118 |
atcttaataaaaacaataaagaaaacaaaattgcatcttcacatggttctaaagtcaaaatctaaatcctgaaagatagatgtagtacatggttaactta |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23618414 |
atcttaataaaaacaataaagaaaacaaaattgcatcttcacatggttctaaagtcaaaatctaaatcctgaaagatagatgtagtacatggttaactta |
23618513 |
T |
|
| Q |
218 |
aattaattcaaccaagtgcagaaaatacagtgtattaataatttaacatggacaacattgaacaaacatagacaaagacaacaaagtaagacaatc |
313 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||| |||||||||||||||||||||||||||| |
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|
| T |
23618514 |
aattaattcaaccaagtgcagaaaatacagtgtattaataattcaacatggacaacgttgaacaaacttagacaaagacaacaaagtaagacaatc |
23618609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 16 - 260
Target Start/End: Complemental strand, 23627107 - 23626868
Alignment:
| Q |
16 |
atactaaaataataatgaacaaaatgggctcaatatcccaagtctagaaacaatcccaaccaaaacataatggcctatgtgcatcaacactcaagagctt |
115 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| |||||||||||||| |||||||||||| |
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|
| T |
23627107 |
atactaaaataataatgaacaaaatgggc-------cccaagtctagaaacaatcccaaccaaaacaaaatagcctatgtgcatcattactcaagagctt |
23627015 |
T |
|
| Q |
116 |
gcatcttaataaaaacaataaagaaaa--caaaattgcatcttcacatggttctaaagtcaaaatctaaatcctgaaagatagatgtagtacatggttaa |
213 |
Q |
| |
|
|||| |||||||||||||||||||||| |||| |||||||||||||||||||||| |||||||||||||| |||||||||||||| |||||||||||| |
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|
| T |
23627014 |
gcatgttaataaaaacaataaagaaaaaacaaagttgcatcttcacatggttctaatgtcaaaatctaaattgtgaaagatagatgtggtacatggttaa |
23626915 |
T |
|
| Q |
214 |
cttaaattaattcaaccaagtgcagaaaatacagtgtattaataatt |
260 |
Q |
| |
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| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23626914 |
cataaattaattcaaccaagtgcagaaaatacagtgtattaataatt |
23626868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 146 - 185
Target Start/End: Complemental strand, 50667435 - 50667396
Alignment:
| Q |
146 |
aattgcatcttcacatggttctaaagtcaaaatctaaatc |
185 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
50667435 |
aattgcatcttgacatggttctaaagtcaaaatctaaatc |
50667396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 139 - 185
Target Start/End: Complemental strand, 50668104 - 50668058
Alignment:
| Q |
139 |
aaaacaaaattgcatcttcacatggttctaaagtcaaaatctaaatc |
185 |
Q |
| |
|
|||| ||||||| ||||||||||||||||||||||||||| |||||| |
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|
| T |
50668104 |
aaaaaaaaattgtatcttcacatggttctaaagtcaaaatttaaatc |
50668058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 153 - 185
Target Start/End: Original strand, 3801761 - 3801793
Alignment:
| Q |
153 |
tcttcacatggttctaaagtcaaaatctaaatc |
185 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| |
|
|
| T |
3801761 |
tcttcacatggttttaaagtcaaaatctaaatc |
3801793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 95; Significance: 2e-46; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 23 - 284
Target Start/End: Original strand, 52806266 - 52806522
Alignment:
| Q |
23 |
aataataatgaacaaaatgggctcaatatcccaagtctagaaacaatcccaaccaaaacataatgg-cctatgtgcatcaacactcaagagcttgcatct |
121 |
Q |
| |
|
|||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||| ||| ||||||| ||||||||||||||| ||| | |
|
|
| T |
52806266 |
aataataatgaaagaaatgagctcaatatcccaagtctagaaacaatcccaaccaaaatgtaaccaacctttgtgcattaacactcaagagcttccatgt |
52806365 |
T |
|
| Q |
122 |
taataaaaacaataaagaaaacaaaattgcatcttcacatggttctaaagtcaaaatctaaatcctgaaagatagatgtagtacatggttaacttaaatt |
221 |
Q |
| |
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| |||||||||| |||||||| | |||||||||||||||| ||||||||||||||||||||||| |||||||| || | | | || |||||| || || |
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|
| T |
52806366 |
tcataaaaacaagaaagaaaaaagaattgcatcttcacattgttctaaagtcaaaatctaaatcgtgaaagatggaaggaatgca-agttaacccaagtt |
52806464 |
T |
|
| Q |
222 |
aattcaaccaagtgcagaaaatacagtgtattaataatttaacatggacaacattgaacaaac |
284 |
Q |
| |
|
||||||||||| ||||||||| | |||| ||| || ||||||||||||||||| ||||| |
|
|
| T |
52806465 |
aattcaaccaactgcagaaaaca-----tattcatagttcaacatggacaacattgagcaaac |
52806522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 167 - 266
Target Start/End: Complemental strand, 53287261 - 53287160
Alignment:
| Q |
167 |
taaagtcaaaatctaaatcctgaaagat---agatgtagtacatggttaacttaaattaattcaaccaagtgcagaaaatacagtgtattaataatttaa |
263 |
Q |
| |
|
||||||||||||||||||| |||||||| ||||| ||| |||| ||||| ||| |||||||||||| ||||||||||||||| |||||||| || || |
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|
| T |
53287261 |
taaagtcaaaatctaaatcatgaaagatgatagatggagtgcatg-ttaacccaaaataattcaaccaactgcagaaaatacagtatattaatagttcaa |
53287163 |
T |
|
| Q |
264 |
cat |
266 |
Q |
| |
|
||| |
|
|
| T |
53287162 |
cat |
53287160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 188 - 284
Target Start/End: Complemental strand, 54142091 - 54141996
Alignment:
| Q |
188 |
gaaagatagatgtagtacatggttaacttaaattaattcaaccaagtgcagaaaatacagtgtattaataatttaacatggacaacattgaacaaac |
284 |
Q |
| |
|
||||||| |||| ||| |||| ||||| |||||||||||||||| | |||||||||| || |||||||| || ||||||||||||||||| ||||| |
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|
| T |
54142091 |
gaaagatggatggagtgcatg-ttaacccaaattaattcaaccaactacagaaaatacggtatattaatagttcaacatggacaacattgagcaaac |
54141996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 167 - 266
Target Start/End: Original strand, 11842478 - 11842579
Alignment:
| Q |
167 |
taaagtcaaaatctaaatcctgaaagat---agatgtagtacatggttaacttaaattaattcaaccaagtgcagaaaatacagtgtattaataatttaa |
263 |
Q |
| |
|
||||||||||||||||||| |||||||| ||||| ||| |||| ||||| ||| |||||||||||| ||||||||||||||| |||||||| || || |
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|
| T |
11842478 |
taaagtcaaaatctaaatcatgaaagatgatagatggagtgcatg-ttaacccaaaataattcaaccaactgcagaaaatacagtatattaatagttcaa |
11842576 |
T |
|
| Q |
264 |
cat |
266 |
Q |
| |
|
||| |
|
|
| T |
11842577 |
cat |
11842579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 127 - 184
Target Start/End: Complemental strand, 41074503 - 41074446
Alignment:
| Q |
127 |
aaaacaataaagaaaacaaaattgcatcttcacatggttctaaagtcaaaatctaaat |
184 |
Q |
| |
|
|||||| ||||| ||| | ||||| |||||||||||||| |||||||||||||||||| |
|
|
| T |
41074503 |
aaaacattaaagcaaaaagaattgtatcttcacatggttttaaagtcaaaatctaaat |
41074446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 147 - 186
Target Start/End: Complemental strand, 39328310 - 39328271
Alignment:
| Q |
147 |
attgcatcttcacatggttctaaagtcaaaatctaaatcc |
186 |
Q |
| |
|
|||| ||||||||||||||||| ||||||||||||||||| |
|
|
| T |
39328310 |
attgtatcttcacatggttctacagtcaaaatctaaatcc |
39328271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 153 - 185
Target Start/End: Original strand, 4522973 - 4523005
Alignment:
| Q |
153 |
tcttcacatggttctaaagtcaaaatctaaatc |
185 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| |
|
|
| T |
4522973 |
tcttcacatggttttaaagtcaaaatctaaatc |
4523005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 155 - 185
Target Start/End: Complemental strand, 444210 - 444180
Alignment:
| Q |
155 |
ttcacatggttctaaagtcaaaatctaaatc |
185 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
444210 |
ttcacatggttctaaagtcaaaatctaaatc |
444180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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