View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20040_high_6 (Length: 207)
Name: NF20040_high_6
Description: NF20040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20040_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 173; Significance: 3e-93; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 10 - 190
Target Start/End: Complemental strand, 3328120 - 3327940
Alignment:
| Q |
10 |
aagaatatcatcatcacatagtagaaaggttgagctagttttgtggcgaaccttgtgcgttatgacttgaagaaggggaaccttaaggaatggaagaagc |
109 |
Q |
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| T |
3328120 |
aagaatatcatcatcacatagtagaaaggttgagctagttttgtggcgaaccttttgcgttatgacttgaagaaggggaaccttaaggaatggaagaagc |
3328021 |
T |
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| Q |
110 |
tatcaagttggttgttgaataatgacatggattccaactttattaagttgaataatggattaatattcctactgggtaatt |
190 |
Q |
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| T |
3328020 |
tatcaagttggttgttgaataatgacatggattccaactttattaagttgaataatagattaatattcctactgggtaatt |
3327940 |
T |
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Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 121 - 168
Target Start/End: Complemental strand, 35801391 - 35801344
Alignment:
| Q |
121 |
ttgttgaataatgacatggattccaactttattaagttgaataatgga |
168 |
Q |
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| T |
35801391 |
ttgttgaataatgacttggattccaactttattaattttaataatgga |
35801344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 76
Target Start/End: Complemental strand, 35801481 - 35801453
Alignment:
| Q |
48 |
ttttgtggcgaaccttgtgcgttatgact |
76 |
Q |
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| T |
35801481 |
ttttgtggcgaaccttgtgcgttatgact |
35801453 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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