View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20040_low_2 (Length: 542)
Name: NF20040_low_2
Description: NF20040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20040_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 453; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 15 - 530
Target Start/End: Original strand, 3307214 - 3307729
Alignment:
| Q |
15 |
caaaggggaatgaaaaaacaaagtataaatgcttcaattgtcacaagaccaataacttcaagaataattgtcacaagaaaggggaaaaaaggattccgtt |
114 |
Q |
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| T |
3307214 |
caaaggggaatgaaaaaacaaagtataaatgcttcaattgtcacaagaccaataacttcaagaataattgtcacaagaaaggggaaaaaaggattccgtt |
3307313 |
T |
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| Q |
115 |
caagatgagattacctcggaggaggattatgagagtgcgggtagtggtggtgacaagttgggaaaccaaaaatgagttaggtcatggtatgtagatgctc |
214 |
Q |
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|||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3307314 |
caagatgagattgcctcggaggaggattatgagagtgtgggtagtggtggtgacaagttgggaaaccaaaaatgagttaggtcatggtatgtagatgctc |
3307413 |
T |
|
| Q |
215 |
ttatcacatgtgtccaagnnnnnnnnntgagactttggagttgaaagaaggtggactcgttcacttagaaataacacaaagtgcaaggttcaagttatga |
314 |
Q |
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|||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
3307414 |
ttatcacatgtgtccaggaaaaaaaatagagactttggagttgaaagaaggtggactcgttcacttagaaataacacagagtgcaaggttcaagttatga |
3307513 |
T |
|
| Q |
315 |
gttcaatttgtcttaggatttttgacaaccttaaattcctattacaaattggcataggtgaatgcatgaatggatcattttgaaccatattagatgcaaa |
414 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
3307514 |
gtttaatttgtcttaggatttttgacaaccttaaattcctattacaaattggcataggtgaatgaatgaatggatcattttgaaccatattagatgcaaa |
3307613 |
T |
|
| Q |
415 |
tttttggagttgggttgcccaagagtttttagaagagaagctgtgagtactacaacatgatcaagatatgtccgtcaatatgaataaatttcaagacacc |
514 |
Q |
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| T |
3307614 |
tttttggagctgggttgcccaagagtttttagaagagaagctgtgagtactacaacatgatcaagatatgtccgtcaatatgaataaatttcaagacacc |
3307713 |
T |
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| Q |
515 |
tgtggaggtttgaagt |
530 |
Q |
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| T |
3307714 |
tatggaggtttgaagt |
3307729 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 35 - 77
Target Start/End: Original strand, 16549593 - 16549635
Alignment:
| Q |
35 |
aagtataaatgcttcaattgtcacaagaccaataacttcaaga |
77 |
Q |
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||||| ||||||||||||||||||||||||||| ||||||||| |
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| T |
16549593 |
aagtacaaatgcttcaattgtcacaagaccaatcacttcaaga |
16549635 |
T |
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