View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20040_low_3 (Length: 361)
Name: NF20040_low_3
Description: NF20040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20040_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 18 - 292
Target Start/End: Original strand, 56219587 - 56219861
Alignment:
| Q |
18 |
agagaccaccgcatgttacaatagcagctcttacatcagaagggttgaagaagacgttgttgcgaggaccagcggtgcgataagcgaagcgtgtggagtg |
117 |
Q |
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| T |
56219587 |
agagaccaccgcatgttacaatagcagctcttacatcagaagggttgaagaagacgttgttgcgaggaccagcggtgcgataagcgaagcgtgtggagtg |
56219686 |
T |
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| Q |
118 |
agagaaaacgaggttgttaagagtgatgtagaagtgttggagttggggggtgtggaagtaaggattttgatcaagtggatttgggaaggttttgaggttg |
217 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56219687 |
agagaaaacgaggttgttattagtgatgtagaagtgttggagttggggggtgtggaagtaaggattttgatcaagtggatttgggaaggttttgaggttt |
56219786 |
T |
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| Q |
218 |
gagatgtagtggttgagatgaggaagatcttttagcttaatgggttcgaataagtttgttacatcttcgagttct |
292 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56219787 |
gagatgtagtggttgagatgaggaagatcttttagcttaatgggttcgaataagtttgttacatcttcgagttct |
56219861 |
T |
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