View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20040_low_5 (Length: 220)
Name: NF20040_low_5
Description: NF20040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20040_low_5 |
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| [»] scaffold0602 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 161; Significance: 5e-86; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 14 - 193
Target Start/End: Complemental strand, 8615606 - 8615426
Alignment:
| Q |
14 |
tgagaagaagttgaagctgtaagtaacaaacacaaaaatatctatcaacaatgttatgttatgagaagtagaaatggatgaaaaatacatcagtgatgtg |
113 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || |||| |
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| T |
8615606 |
tgagaagaagttgaagctgtaagtaacaaacacaaaaatatctatcagcaatgttatgttatgagaagtagaaatggatgaaaaatacatcactgttgtg |
8615507 |
T |
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| Q |
114 |
ttgaatgaagatgaaagttgag-gattgaagtgtttatgatttggaaaatggaagtgtgaaaatgaatggaatagtaaagt |
193 |
Q |
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| T |
8615506 |
ttgaatgaagatgaaagttgagagattgaagtgtttatgatttggaaaatggaagtgtgaaaatgaatggaatagtaaagt |
8615426 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 14 - 193
Target Start/End: Original strand, 8643416 - 8643597
Alignment:
| Q |
14 |
tgagaagaagttgaagctgtaagtaacaaacacaaaaatatctatcaacaatgttatgttatgagaagtagaaatggatg-aaaaatacatcagtgatgt |
112 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| || ||| |
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| T |
8643416 |
tgagaagaagttgaagctgtaagtaacaaacacgaaaatatctatcagcaatgttatgttatgagaagtagaaatggatgaaaaaatacatcactgttgt |
8643515 |
T |
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| Q |
113 |
gttgaatgaagatgaaagttgag-gattgaagtgtttatgatttggaaaatggaagtgtgaaaatgaatggaatagtaaagt |
193 |
Q |
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| T |
8643516 |
gttgaatgaagatgaaagttgagagattgaagtgtttatgatttggaaaatggaagtgtgaaaatgaatggaatagtaaagt |
8643597 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0602 (Bit Score: 154; Significance: 7e-82; HSPs: 1)
Name: scaffold0602
Description:
Target: scaffold0602; HSP #1
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 14 - 193
Target Start/End: Complemental strand, 6059 - 5878
Alignment:
| Q |
14 |
tgagaagaagttgaagctgtaagtaacaaacacaaaaatatctatcaacaatgttatgttatgagaagtagaaatggatga-aaaatacatcagtgatgt |
112 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| || ||| |
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| T |
6059 |
tgagaagaagttgaagctgtaagtaacaaacacaaaaatatctatcagcaatgttatgttatgagaagtagaaatggatgaaaaaatacatcactgttgt |
5960 |
T |
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| Q |
113 |
gttgaatgaagatgaaagttgag-gattgaagtgtttatgatttggaaaatggaagtgtgaaaatgaatggaatagtaaagt |
193 |
Q |
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| T |
5959 |
gttgaatgaagatgaaagttgagagattgaagtgtttatgatttggaaaatggaagtgtgaaaatgaatggaatagtaaagt |
5878 |
T |
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