View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20041_high_3 (Length: 363)
Name: NF20041_high_3
Description: NF20041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20041_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 197; Significance: 1e-107; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 2 - 291
Target Start/End: Original strand, 45547329 - 45547604
Alignment:
| Q |
2 |
ttcaagttttaatatggatgaagttgtcaaacttaacaatatcaactttatcagttaagttagatcttacaaactatttaaataatttagataattttgt |
101 |
Q |
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| T |
45547329 |
ttcaagttttaatctggataaagttgtcaaacttaacaa-atcaaccttatcagttaaattagatcatacaaactatttgaataattt---------tgt |
45547418 |
T |
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| Q |
102 |
gtggttgattagattaaataaatgaaaataagaagttgaatcctaaaacatgcattatcaattttacaaacaaattaagatgattagggtggatcaatgg |
201 |
Q |
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| T |
45547419 |
atgattgattagattaaataaatgaagataagaagttgaatcctaaaacatgcattatcaattttacaaacaaattaagatgattagggtggatcaatgg |
45547518 |
T |
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| Q |
202 |
aactatccttcatgtccatcgagttaacccttacaagctagctacataacttctctacacatgaccaaaccccttgaaatgaaattctac |
291 |
Q |
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| T |
45547519 |
aactatccttcatgtccatcgagttaacccttaca----agctacataacttctctacacatgaccaaaccccttgaaatgaaattctac |
45547604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 306 - 345
Target Start/End: Original strand, 45547623 - 45547662
Alignment:
| Q |
306 |
acgatagagggtctctaaactatctttctaaattgaattt |
345 |
Q |
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| T |
45547623 |
acgatagagggtctctaaactatctttctaaattgaattt |
45547662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 138 - 187
Target Start/End: Original strand, 45552700 - 45552749
Alignment:
| Q |
138 |
tgaatcctaaaacatgcattatcaattttacaaacaaattaagatgatta |
187 |
Q |
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| T |
45552700 |
tgaatcctaaaacatgtattatcaattttacaaacagattaaaatgatta |
45552749 |
T |
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