View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20041_low_2 (Length: 386)
Name: NF20041_low_2
Description: NF20041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20041_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 211; Significance: 1e-115; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 73 - 384
Target Start/End: Complemental strand, 45547604 - 45547307
Alignment:
| Q |
73 |
gtagaatttcatttcaaggggtttggtcatgtgtagagaagttatgtagctagcttgtaagggttaactcgatggacatgaaggatagttccattgatcc |
172 |
Q |
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| T |
45547604 |
gtagaatttcatttcaaggggtttggtcatgtgtagagaagttatgtagct----tgtaagggttaactcgatggacatgaaggatagttccattgatcc |
45547509 |
T |
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| Q |
173 |
accctaatcatcttaatttgtttgtaaaattgataatgcatgttttaggattcaacttcttattttcatttatttaatctaatcaaccacacaaaattat |
272 |
Q |
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| T |
45547508 |
accctaatcatcttaatttgtttgtaaaattgataatgcatgttttaggattcaacttcttatcttcatttatttaatctaatcaatcataca------- |
45547416 |
T |
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| Q |
273 |
ctaaattatttaaatagtttgtaagatctaacttaactgataaagttgatattgttaagtttgacaacttcatccatattaaaacttgaatccatgtagt |
372 |
Q |
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| T |
45547415 |
--aaattattcaaatagtttgtatgatctaatttaactgataaggttgat-ttgttaagtttgacaactttatccagattaaaacttgaaaccatatagt |
45547319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 58
Target Start/End: Complemental strand, 45547662 - 45547623
Alignment:
| Q |
19 |
aaattcaatttagaaagatagtttagagaccctctatcgt |
58 |
Q |
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| T |
45547662 |
aaattcaatttagaaagatagtttagagaccctctatcgt |
45547623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 177 - 226
Target Start/End: Complemental strand, 45552749 - 45552700
Alignment:
| Q |
177 |
taatcatcttaatttgtttgtaaaattgataatgcatgttttaggattca |
226 |
Q |
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| T |
45552749 |
taatcattttaatctgtttgtaaaattgataatacatgttttaggattca |
45552700 |
T |
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