View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20041_low_5 (Length: 292)

Name: NF20041_low_5
Description: NF20041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20041_low_5
NF20041_low_5
[»] chr5 (10 HSPs)
chr5 (51-234)||(15304627-15304816)
chr5 (60-112)||(40971867-40971919)
chr5 (60-112)||(7630626-7630678)
chr5 (51-112)||(21034650-21034711)
chr5 (51-140)||(40972119-40972210)
chr5 (74-104)||(25908660-25908690)
chr5 (74-139)||(3850206-3850273)
chr5 (243-275)||(15305264-15305296)
chr5 (74-139)||(36569606-36569673)
chr5 (74-102)||(36569826-36569854)
[»] chr1 (8 HSPs)
chr1 (60-138)||(33261690-33261769)
chr1 (60-138)||(33281849-33281928)
chr1 (51-139)||(1691295-1691385)
chr1 (69-136)||(362675-362744)
chr1 (51-112)||(14398275-14398336)
chr1 (52-96)||(27085998-27086043)
chr1 (60-96)||(2058591-2058627)
chr1 (64-96)||(37072490-37072522)
[»] chr4 (14 HSPs)
chr4 (51-138)||(17947286-17947375)
chr4 (61-112)||(36620942-36620993)
chr4 (64-137)||(2478935-2479010)
chr4 (53-138)||(31792623-31792710)
chr4 (63-111)||(33413853-33413901)
chr4 (53-146)||(51203212-51203307)
chr4 (74-104)||(23256993-23257023)
chr4 (74-104)||(27704722-27704752)
chr4 (64-139)||(41823537-41823614)
chr4 (74-144)||(3060565-3060637)
chr4 (60-104)||(5521245-5521289)
chr4 (74-143)||(8459339-8459410)
chr4 (51-87)||(15187191-15187227)
chr4 (51-139)||(52131906-52131996)
[»] chr3 (9 HSPs)
chr3 (54-139)||(16024807-16024894)
chr3 (51-112)||(1741996-1742057)
chr3 (51-143)||(31989798-31989892)
chr3 (54-104)||(33309686-33309736)
chr3 (52-141)||(54394304-54394395)
chr3 (53-112)||(9016893-9016952)
chr3 (51-96)||(33309945-33309990)
chr3 (51-84)||(54141631-54141664)
chr3 (72-104)||(33757434-33757466)
[»] chr7 (10 HSPs)
chr7 (52-140)||(33005133-33005224)
chr7 (51-112)||(14584955-14585016)
chr7 (51-112)||(15998825-15998886)
chr7 (53-135)||(18503569-18503653)
chr7 (64-112)||(33998862-33998910)
chr7 (65-112)||(2147102-2147149)
chr7 (60-96)||(26241528-26241564)
chr7 (54-104)||(25245047-25245097)
chr7 (59-104)||(39187700-39187745)
chr7 (74-102)||(2285576-2285604)
[»] chr2 (12 HSPs)
chr2 (51-143)||(35665585-35665679)
chr2 (60-105)||(578245-578290)
chr2 (53-112)||(12926534-12926593)
chr2 (52-103)||(25954749-25954800)
chr2 (51-112)||(654001-654062)
chr2 (51-112)||(28191733-28191794)
chr2 (61-150)||(24895742-24895833)
chr2 (52-139)||(35665325-35665414)
chr2 (53-139)||(7876443-7876529)
chr2 (74-144)||(33024190-33024260)
chr2 (64-145)||(43281866-43281948)
chr2 (60-105)||(27002982-27003027)
[»] chr8 (11 HSPs)
chr8 (51-112)||(158731-158792)
chr8 (51-110)||(15249582-15249641)
chr8 (52-105)||(23757321-23757374)
chr8 (60-140)||(33757870-33757952)
chr8 (51-112)||(13515628-13515689)
chr8 (51-112)||(13605161-13605222)
chr8 (52-105)||(22209993-22210046)
chr8 (74-104)||(10167723-10167753)
chr8 (62-137)||(14046461-14046536)
chr8 (74-102)||(15890103-15890131)
chr8 (74-143)||(32374992-32375063)
[»] scaffold0939 (1 HSPs)
scaffold0939 (52-147)||(707-804)
[»] chr6 (4 HSPs)
chr6 (52-135)||(4096768-4096853)
chr6 (60-96)||(1112026-1112062)
chr6 (62-141)||(26386489-26386568)
chr6 (74-143)||(27771671-27771742)
[»] scaffold0191 (1 HSPs)
scaffold0191 (74-106)||(4451-4483)


Alignment Details
Target: chr5 (Bit Score: 142; Significance: 1e-74; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 51 - 234
Target Start/End: Original strand, 15304627 - 15304816
Alignment:
Q  51 ttttgtgaagatgaaaacatctcattttattttttagggactaaaaacaaaattta---atatatataaggacggaaaagttatttaacccttaataaaa 147  Q
    |||||||||||| ||||||||||||||||||||||| ||||||||| |||||| ||   ||||||||||||||||||||||||||||||||||| |||||    
T  15304627 ttttgtgaagataaaaacatctcattttattttttaaggactaaaagcaaaatatatatatatatataaggacggaaaagttatttaacccttactaaaa 15304726  T
Q  148 atact---attatctctatttcaattatgcatatttttcttgatctattgtaaaatggtccaatgaatcacttattatggacaactggag 234  Q
    |||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15304727 atactactattatctctatttcaattatgcatatttttcttgatctattgtaaaatggtccaatgaatcacttattatggacaactggag 15304816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 60 - 112
Target Start/End: Complemental strand, 40971919 - 40971867
Alignment:
Q  60 gatgaaaacatctcattttattttttagggactaaaaacaaaatttaatatat 112  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||| |||||    
T  40971919 gatgaaaacatctcattttattttttagggactaaaatcaaaatttattatat 40971867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 60 - 112
Target Start/End: Original strand, 7630626 - 7630678
Alignment:
Q  60 gatgaaaacatctcattttattttttagggactaaaaacaaaatttaatatat 112  Q
    |||||||||||||| |||||||||||||||||||||| |||||||| ||||||    
T  7630626 gatgaaaacatctctttttattttttagggactaaaatcaaaatttgatatat 7630678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 51 - 112
Target Start/End: Complemental strand, 21034711 - 21034650
Alignment:
Q  51 ttttgtgaagatgaaaacatctcattttattttttagggactaaaaacaaaatttaatatat 112  Q
    |||||||| | |||||||||||||||||||||||| ||||||| || |||||||| ||||||    
T  21034711 ttttgtgagggtgaaaacatctcattttattttttggggactataatcaaaatttgatatat 21034650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 51 - 140
Target Start/End: Original strand, 40972119 - 40972210
Alignment:
Q  51 ttttgtgaagatgaaaacatctcattttattttttagggactaaaaacaaaatt--taatatatataaggacggaaaagttatttaaccctt 140  Q
    |||||||| ||| |||||||   ||||||||||||||||||||||| |||||||  | |||| |||| ||| | |||| |||||||||||||    
T  40972119 ttttgtgaggataaaaacattctattttattttttagggactaaaatcaaaattcgttatatttatagggatgaaaaaattatttaaccctt 40972210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 74 - 104
Target Start/End: Original strand, 25908660 - 25908690
Alignment:
Q  74 attttattttttagggactaaaaacaaaatt 104  Q
    |||||||||||||||||||||||||||||||    
T  25908660 attttattttttagggactaaaaacaaaatt 25908690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 74 - 139
Target Start/End: Original strand, 3850206 - 3850273
Alignment:
Q  74 attttattttttagggactaaaaacaaaattt--aatatatataaggacggaaaagttatttaaccct 139  Q
    |||||||||| |||||||||||||||||||||  ||||| |||| ||||  |||| ||| ||||||||    
T  3850206 attttattttatagggactaaaaacaaaattttgaatatttatagggactaaaaacttaattaaccct 3850273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 243 - 275
Target Start/End: Original strand, 15305264 - 15305296
Alignment:
Q  243 tactactatgggtgatagattggtcctttgtaa 275  Q
    ||||||||||||||||||| |||||||||||||    
T  15305264 tactactatgggtgatagagtggtcctttgtaa 15305296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 74 - 139
Target Start/End: Complemental strand, 36569673 - 36569606
Alignment:
Q  74 attttattttttagggactaaaaacaaaa--tttaatatatataaggacggaaaagttatttaaccct 139  Q
    |||||||||| ||||||||||||||||||   | ||||| |||||||||  |||| ||||||||||||    
T  36569673 attttattttgtagggactaaaaacaaaactgtgaatatttataaggactaaaaacttatttaaccct 36569606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 74 - 102
Target Start/End: Original strand, 36569826 - 36569854
Alignment:
Q  74 attttattttttagggactaaaaacaaaa 102  Q
    |||||||||||||||||||||||||||||    
T  36569826 attttattttttagggactaaaaacaaaa 36569854  T

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Target: chr1 (Bit Score: 52; Significance: 7e-21; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 60 - 138
Target Start/End: Complemental strand, 33261769 - 33261690
Alignment:
Q  60 gatgaaaacatctcattttattttttagggactaaaaacaaaatttaata-tatataaggacggaaaagttatttaaccc 138  Q
    ||||||||||||||||||||||||||||||||||||| |||||||| ||| | |||||||||| |||| |||||||||||    
T  33261769 gatgaaaacatctcattttattttttagggactaaaatcaaaatttgatattttataaggacgaaaaacttatttaaccc 33261690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 60 - 138
Target Start/End: Complemental strand, 33281928 - 33281849
Alignment:
Q  60 gatgaaaacatctcattttattttttagggactaaaaacaaaatttaata-tatataaggacggaaaagttatttaaccc 138  Q
    ||||||||||||||||||||||||||||||||||||| |||||||| ||| | |||||||||| |||| |||||||||||    
T  33281928 gatgaaaacatctcattttattttttagggactaaaatcaaaatttgatattttataaggacgaaaaacttatttaaccc 33281849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 51 - 139
Target Start/End: Complemental strand, 1691385 - 1691295
Alignment:
Q  51 ttttgtgaagatgaaaacatctcattttattttttagggactaaaaacaaaatttaa--tatatataaggacggaaaagttatttaaccct 139  Q
    |||||||||||||||||||||||||||||  ||||||||||||||| |||| |||||  ||| |||| ||||| |||| ||||||||||||    
T  1691385 ttttgtgaagatgaaaacatctcattttacattttagggactaaaatcaaattttaatgtatctatagggacgaaaaacttatttaaccct 1691295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 69 - 136
Target Start/End: Complemental strand, 362744 - 362675
Alignment:
Q  69 atctcattttattttttagggactaaaaacaaaatttaatata--tataaggacggaaaagttatttaac 136  Q
    |||||||||||||||||||||| ||||| |||| |||||||||  |||| ||||| |||| |||||||||    
T  362744 atctcattttattttttagggattaaaatcaaattttaatatatttatagggacgaaaaacttatttaac 362675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 51 - 112
Target Start/End: Original strand, 14398275 - 14398336
Alignment:
Q  51 ttttgtgaagatgaaaacatctcattttattttttagggactaaaaacaaaatttaatatat 112  Q
    |||| ||| ||||||||||||||||||||||| ||||  ||||||| |||||||| ||||||    
T  14398275 ttttatgaggatgaaaacatctcattttatttgttagaaactaaaatcaaaatttgatatat 14398336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 52 - 96
Target Start/End: Complemental strand, 27086043 - 27085998
Alignment:
Q  52 tttgtgaagatgaaaacatctca-ttttattttttagggactaaaa 96  Q
    ||||||| ||||||||||||||| ||||||||||||||||||||||    
T  27086043 tttgtgaggatgaaaacatctcatttttattttttagggactaaaa 27085998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 60 - 96
Target Start/End: Complemental strand, 2058627 - 2058591
Alignment:
Q  60 gatgaaaacatctcattttattttttagggactaaaa 96  Q
    |||||||||||||||||||| |||||||||| |||||    
T  2058627 gatgaaaacatctcattttactttttagggattaaaa 2058591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 64 - 96
Target Start/End: Original strand, 37072490 - 37072522
Alignment:
Q  64 aaaacatctcattttattttttagggactaaaa 96  Q
    |||||||||||||||||||||||| ||||||||    
T  37072490 aaaacatctcattttattttttagagactaaaa 37072522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 3e-20; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 51 - 138
Target Start/End: Original strand, 17947286 - 17947375
Alignment:
Q  51 ttttgtgaagatgaaaacatctcattttattttttagggactaaaaacaaaatttaatata--tataaggacggaaaagttatttaaccc 138  Q
    |||||||| ||||||||||||||||||||||||||||||||||||| |||||||| |||||  |||| ||| | |||| |||||||||||    
T  17947286 ttttgtgaggatgaaaacatctcattttattttttagggactaaaatcaaaatttgatatatttatagggatgaaaaatttatttaaccc 17947375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 61 - 112
Target Start/End: Complemental strand, 36620993 - 36620942
Alignment:
Q  61 atgaaaacatctcattttattttttagggactaaaaacaaaatttaatatat 112  Q
    |||||||||||||||||||||||||||| ||||||| |||||||||||||||    
T  36620993 atgaaaacatctcattttattttttaggaactaaaatcaaaatttaatatat 36620942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 64 - 137
Target Start/End: Complemental strand, 2479010 - 2478935
Alignment:
Q  64 aaaacatctcattttattttttagggactaaaaacaaaatttaatata--tataaggacggaaaagttatttaacc 137  Q
    |||||||||||||||| |||||||||||||||| ||||||| ||||||  |||| ||||| |||| ||||||||||    
T  2479010 aaaacatctcattttaatttttagggactaaaatcaaaattaaatatatttatagggacgaaaaacttatttaacc 2478935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 53 - 138
Target Start/End: Complemental strand, 31792710 - 31792623
Alignment:
Q  53 ttgtgaagatgaaaacatctcattttattttttagggactaaaaacaaaatttaatata--tataaggacggaaaagttatttaaccc 138  Q
    |||||| ||||||||||| ||||||||||||||||  ||||||| |||||||| |||||  |||| ||||| |||| |||||||||||    
T  31792710 ttgtgaggatgaaaacatttcattttattttttagaaactaaaatcaaaatttgatatatttatagggacgaaaaatttatttaaccc 31792623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 63 - 111
Target Start/End: Complemental strand, 33413901 - 33413853
Alignment:
Q  63 gaaaacatctcattttattttttagggactaaaaacaaaatttaatata 111  Q
    |||||||||||||||||||||||||||||||| | ||||||||| ||||    
T  33413901 gaaaacatctcattttattttttagggactaatatcaaaatttactata 33413853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 53 - 146
Target Start/End: Complemental strand, 51203307 - 51203212
Alignment:
Q  53 ttgtgaagatgaaaacatctcattttattttttagggactaaaaacaaaatt--taatatatataaggacggaaaagttatttaacccttaataaa 146  Q
    |||||| ||||||| |||   ||||||||||||||||||||||| |||||||   ||||| |||| ||||| |||| |||||||||| | ||||||    
T  51203307 ttgtgaggatgaaagcattctattttattttttagggactaaaatcaaaattcgcaatatttatagggacgaaaaacttatttaaccataaataaa 51203212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 74 - 104
Target Start/End: Complemental strand, 23257023 - 23256993
Alignment:
Q  74 attttattttttagggactaaaaacaaaatt 104  Q
    |||||||||||||||||||||||||||||||    
T  23257023 attttattttttagggactaaaaacaaaatt 23256993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 74 - 104
Target Start/End: Original strand, 27704722 - 27704752
Alignment:
Q  74 attttattttttagggactaaaaacaaaatt 104  Q
    |||||||||||||||||||||||||||||||    
T  27704722 attttattttttagggactaaaaacaaaatt 27704752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 64 - 139
Target Start/End: Complemental strand, 41823614 - 41823537
Alignment:
Q  64 aaaacatctcattttattttttagggactaaaaacaaaatttaatata--tataaggacggaaaagttatttaaccct 139  Q
    ||||||||||||||||| ||||| ||| ||||| |||||||| |||||  ||| |||| | |||| ||||||||||||    
T  41823614 aaaacatctcattttatcttttaaggattaaaatcaaaatttgatatatttatgaggatgaaaaacttatttaaccct 41823537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 144
Target Start/End: Original strand, 3060565 - 3060637
Alignment:
Q  74 attttattttttagggactaaaaacaaaa--tttaatatatataaggacggaaaagttatttaacccttaata 144  Q
    |||||||||||||||||||||||||||||   | ||||| |||| ||||  |||| ||| |||||||||||||    
T  3060565 attttattttttagggactaaaaacaaaactgtaaatatttatagggactaaaaacttaattaacccttaata 3060637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 60 - 104
Target Start/End: Complemental strand, 5521289 - 5521245
Alignment:
Q  60 gatgaaaacatctcattttattttttagggactaaaaacaaaatt 104  Q
    |||||||||||||||||| ||||||||| |||| ||| |||||||    
T  5521289 gatgaaaacatctcatttgattttttagagacttaaatcaaaatt 5521245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 74 - 143
Target Start/End: Complemental strand, 8459410 - 8459339
Alignment:
Q  74 attttattttttagggactaaaaacaaaa--tttaatatatataaggacggaaaagttatttaacccttaat 143  Q
    |||||||||| ||||||||||||||||||   ||||||| |||| ||||  |||| ||| ||||||||||||    
T  8459410 attttattttgtagggactaaaaacaaaactgttaatatttatagggactaaaaacttaattaacccttaat 8459339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 51 - 87
Target Start/End: Original strand, 15187191 - 15187227
Alignment:
Q  51 ttttgtgaagatgaaaacatctcattttattttttag 87  Q
    ||||||||| || ||||||||||||||||||||||||    
T  15187191 ttttgtgaatataaaaacatctcattttattttttag 15187227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 51 - 139
Target Start/End: Complemental strand, 52131996 - 52131906
Alignment:
Q  51 ttttgtgaagatgaaaacatctcatttt-attttttagggactaaaaacaaaatt--taatatatataaggacggaaaagttatttaaccct 139  Q
    |||||||| ||||||||||| ||||||| |||||||| ||||||||| |||||||  | |||| | || ||||||| || ||||||||||||    
T  52131996 ttttgtgaggatgaaaacat-tcattttaattttttatggactaaaatcaaaattcgttatatttgtagggacggataacttatttaaccct 52131906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 5e-19; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 54 - 139
Target Start/End: Original strand, 16024807 - 16024894
Alignment:
Q  54 tgtgaagatgaaaacatctcattttattttttagggactaaaaacaaaatttaatata--tataaggacggaaaagttatttaaccct 139  Q
    ||||| ||||||||||||||||||||||||||||||||||||| |||||||| |||||  |||| ||||| | || ||||||||||||    
T  16024807 tgtgaggatgaaaacatctcattttattttttagggactaaaatcaaaatttgatatatttatagggacgaataacttatttaaccct 16024894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 51 - 112
Target Start/End: Complemental strand, 1742057 - 1741996
Alignment:
Q  51 ttttgtgaagatgaaaacatctcattttattttttagggactaaaaacaaaatttaatatat 112  Q
    |||||||| ||||||||||||||||||||||||||||||| ||||| |||||||| ||||||    
T  1742057 ttttgtgaggatgaaaacatctcattttattttttagggattaaaatcaaaatttgatatat 1741996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 51 - 143
Target Start/End: Complemental strand, 31989892 - 31989798
Alignment:
Q  51 ttttgtgaagatgaaaacatctcattttattttttagggactaaaaacaaaatttaatata--tataaggacggaaaagttatttaacccttaat 143  Q
    |||||||| ||||||||| |   |||| ||||||||||||||||||  ||||||| |||||  |||| ||||| |||| ||||||||||||||||    
T  31989892 ttttgtgaggatgaaaacgttcaatttaattttttagggactaaaatgaaaatttgatatatttatatggacgaaaaacttatttaacccttaat 31989798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 54 - 104
Target Start/End: Complemental strand, 33309736 - 33309686
Alignment:
Q  54 tgtgaagatgaaaacatctcattttattttttagggactaaaaacaaaatt 104  Q
    ||||| |||||||||||| | |||||||||||||||||||||| |||||||    
T  33309736 tgtgaggatgaaaacatcccgttttattttttagggactaaaatcaaaatt 33309686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 52 - 141
Target Start/End: Complemental strand, 54394395 - 54394304
Alignment:
Q  52 tttgtgaagatgaaaacatctcattttattttttagggactaaaaacaaaat--ttaatatatataaggacggaaaagttatttaaccctta 141  Q
    |||||||| ||||||||||   |||| |||||||||||||||||| ||||||  || |||  |||||| ||| |||| ||||||||||||||    
T  54394395 tttgtgaatatgaaaacattcaatttaattttttagggactaaaatcaaaattctttatagttataagaacgaaaaacttatttaaccctta 54394304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 53 - 112
Target Start/End: Original strand, 9016893 - 9016952
Alignment:
Q  53 ttgtgaagatgaaaacatctcattttattttttagggactaaaaacaaaatttaatatat 112  Q
    |||||| ||||||||||| ||||||||||| |||||||| |||| |||| ||| ||||||    
T  9016893 ttgtgaggatgaaaacatttcattttatttgttagggacgaaaaccaaagtttgatatat 9016952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 96
Target Start/End: Original strand, 33309945 - 33309990
Alignment:
Q  51 ttttgtgaagatgaaaacatctcattttattttttagggactaaaa 96  Q
    |||||||| |||||||||| | | ||||||||||||||||||||||    
T  33309945 ttttgtgaggatgaaaacaccccgttttattttttagggactaaaa 33309990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 84
Target Start/End: Original strand, 54141631 - 54141664
Alignment:
Q  51 ttttgtgaagatgaaaacatctcattttattttt 84  Q
    |||||||| |||||||||||||||||||||||||    
T  54141631 ttttgtgaggatgaaaacatctcattttattttt 54141664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 72 - 104
Target Start/End: Complemental strand, 33757466 - 33757434
Alignment:
Q  72 tcattttattttttagggactaaaaacaaaatt 104  Q
    |||||||||||| ||||||||||||||||||||    
T  33757466 tcattttattttgtagggactaaaaacaaaatt 33757434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 52 - 140
Target Start/End: Original strand, 33005133 - 33005224
Alignment:
Q  52 tttgtgaagatgaaaacatctcatttta-ttttttagggactaaaaacaaaatttaatata--tataaggacggaaaagttatttaaccctt 140  Q
    ||||||| ||||||||| |||||||||| |||||||||||| |||| ||||||||||||||  |||| ||||| |||| |||||||||||||    
T  33005133 tttgtgaggatgaaaacttctcattttatttttttagggacgaaaagcaaaatttaatatatttatagggacgaaaaacttatttaaccctt 33005224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 51 - 112
Target Start/End: Complemental strand, 14585016 - 14584955
Alignment:
Q  51 ttttgtgaagatgaaaacatctcattttattttttagggactaaaaacaaaatttaatatat 112  Q
    |||||||| |||||||||||| | |||||||||||||||||||||| ||||||||| |||||    
T  14585016 ttttgtgatgatgaaaacatcacgttttattttttagggactaaaatcaaaatttattatat 14584955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 51 - 112
Target Start/End: Complemental strand, 15998886 - 15998825
Alignment:
Q  51 ttttgtgaagatgaaaacatctcattttattttttagggactaaaaacaaaatttaatatat 112  Q
    |||||||| |||||||||||| | |||||||||||||||||||||| ||||||||| |||||    
T  15998886 ttttgtgatgatgaaaacatcacgttttattttttagggactaaaatcaaaatttactatat 15998825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 53 - 135
Target Start/End: Complemental strand, 18503653 - 18503569
Alignment:
Q  53 ttgtgaagatgaaaacatctcattttattttttagggactaaaaacaaaatttaatata--tataaggacggaaaagttatttaa 135  Q
    |||||| |||||||||||||||||||||||||||||||  |||| |||||||| |||||  |||||||||| |||| ||| ||||    
T  18503653 ttgtgaggatgaaaacatctcattttattttttagggataaaaatcaaaatttgatatatttataaggacgaaaaacttagttaa 18503569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 64 - 112
Target Start/End: Original strand, 33998862 - 33998910
Alignment:
Q  64 aaaacatctcattttattttttagggactaaaaacaaaatttaatatat 112  Q
    |||| |||||||||||||||||||||||||||| |||||||||||||||    
T  33998862 aaaatatctcattttattttttagggactaaaatcaaaatttaatatat 33998910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 65 - 112
Target Start/End: Original strand, 2147102 - 2147149
Alignment:
Q  65 aaacatctcattttattttttagggactaaaaacaaaatttaatatat 112  Q
    ||||||||||||||||||||||||||| ||||  ||||||||||||||    
T  2147102 aaacatctcattttattttttagggacgaaaactaaaatttaatatat 2147149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 96
Target Start/End: Original strand, 26241528 - 26241564
Alignment:
Q  60 gatgaaaacatctcattttattttttagggactaaaa 96  Q
    ||||||||||||||||||||||||||||||| |||||    
T  26241528 gatgaaaacatctcattttattttttagggattaaaa 26241564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 54 - 104
Target Start/End: Complemental strand, 25245097 - 25245047
Alignment:
Q  54 tgtgaagatgaaaacatctcattttattttttagggactaaaaacaaaatt 104  Q
    ||||||||||||||||| ||||||||| |||||||||  |||| |||||||    
T  25245097 tgtgaagatgaaaacatttcattttatattttagggatcaaaatcaaaatt 25245047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 104
Target Start/End: Original strand, 39187700 - 39187745
Alignment:
Q  59 agatgaaaacatctcattttattttttagggactaaaaacaaaatt 104  Q
    ||||||||||||||||||||||||| ||  |||||||| |||||||    
T  39187700 agatgaaaacatctcattttattttctaaagactaaaatcaaaatt 39187745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 74 - 102
Target Start/End: Original strand, 2285576 - 2285604
Alignment:
Q  74 attttattttttagggactaaaaacaaaa 102  Q
    |||||||||||||||||||||||||||||    
T  2285576 attttattttttagggactaaaaacaaaa 2285604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 51 - 143
Target Start/End: Original strand, 35665585 - 35665679
Alignment:
Q  51 ttttgtgaagatgaaaacatctcattttattttttagggactaaaaacaaaatttaatat--atataaggacggaaaagttatttaacccttaat 143  Q
    |||||||| |||||||||||||||||||| |||||||||||||||| |||| ||| ||||   |||| ||||  |||| ||||||||||||||||    
T  35665585 ttttgtgaggatgaaaacatctcattttagtttttagggactaaaatcaaattttgatatgcttatagggacaaaaaatttatttaacccttaat 35665679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 60 - 105
Target Start/End: Complemental strand, 578290 - 578245
Alignment:
Q  60 gatgaaaacatctcattttattttttagggactaaaaacaaaattt 105  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||    
T  578290 gatgaaaacatctcattttattttttagggactaaaatcaaaattt 578245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 53 - 112
Target Start/End: Complemental strand, 12926593 - 12926534
Alignment:
Q  53 ttgtgaagatgaaaacatctcattttattttttagggactaaaaacaaaatttaatatat 112  Q
    |||||| |||||||||| |||||||||||||| |||||| |||| ||||||| |||||||    
T  12926593 ttgtgaggatgaaaacaactcattttatttttcagggacgaaaatcaaaattcaatatat 12926534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 52 - 103
Target Start/End: Original strand, 25954749 - 25954800
Alignment:
Q  52 tttgtgaagatgaaaacatctcattttattttttagggactaaaaacaaaat 103  Q
    ||||||| ||||||||||||||||||||||||||||  ||||||| ||||||    
T  25954749 tttgtgaggatgaaaacatctcattttattttttagaaactaaaatcaaaat 25954800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 51 - 112
Target Start/End: Complemental strand, 654062 - 654001
Alignment:
Q  51 ttttgtgaagatgaaaacatctcattttattttttagggactaaaaacaaaatttaatatat 112  Q
    |||||||| ||||||||||||| |||||| |||||||||| ||||  |||| ||||||||||    
T  654062 ttttgtgaggatgaaaacatctgattttaatttttagggaataaagtcaaattttaatatat 654001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 51 - 112
Target Start/End: Original strand, 28191733 - 28191794
Alignment:
Q  51 ttttgtgaagatgaaaacatctcattttattttttagggactaaaaacaaaatttaatatat 112  Q
    |||||||| |||||||||||||||||||||||| ||  || ||||| |||||||| ||||||    
T  28191733 ttttgtgaggatgaaaacatctcattttattttgtaaagattaaaatcaaaatttgatatat 28191794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 61 - 150
Target Start/End: Original strand, 24895742 - 24895833
Alignment:
Q  61 atgaaaacatctcattttattttttagggactaaaaacaaaatt--taatatatataaggacggaaaagttatttaacccttaataaaaata 150  Q
    ||||||||||   |||||||||| |||||||||||| |||||||  | |||| | |||||||| |||| ||||||||||||  |||||||||    
T  24895742 atgaaaacattcaattttattttgtagggactaaaatcaaaatttgttatatttgtaaggacgaaaaacttatttaaccctgtataaaaata 24895833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 52 - 139
Target Start/End: Complemental strand, 35665414 - 35665325
Alignment:
Q  52 tttgtgaagatgaaaacatctcatttta-ttttttagggactaaaaacaaaatt--taatatatataaggacggaaaagttatttaaccct 139  Q
    ||||||| ||||||||||| ||| |||| ||||||||||||||||| |||||||    |||| |||||||||| |||| ||||||||||||    
T  35665414 tttgtgaggatgaaaacat-tcactttaattttttagggactaaaatcaaaattcgctatatttataaggacgaaaaacttatttaaccct 35665325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 53 - 139
Target Start/End: Original strand, 7876443 - 7876529
Alignment:
Q  53 ttgtgaagatgaaaacatctcattttattttttagggactaaaaacaaaatttaatatat--ataaggacggaaaagttatttaaccct 139  Q
    |||||| |||||| |||||||||||   |||||||||| ||||| ||||||| | |||||  ||||||||| |||| ||||||||||||    
T  7876443 ttgtgaggatgaacacatctcattta--tttttagggattaaaatcaaaattcattatatttataaggacgaaaaatttatttaaccct 7876529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 74 - 144
Target Start/End: Original strand, 33024190 - 33024260
Alignment:
Q  74 attttattttttagggactaaaaacaaaatttaatatatataaggacggaaaagttatttaacccttaata 144  Q
    |||||||||| ||||||||||||| |||||| |||||  ||| ||||  |||| ||| |||||||||||||    
T  33024190 attttattttatagggactaaaaataaaattgaatattaatagggactaaaaacttaattaacccttaata 33024260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 64 - 145
Target Start/End: Original strand, 43281866 - 43281948
Alignment:
Q  64 aaaacatctcattttattttttagggactaaaaacaaaatttaatata-tataaggacggaaaagttatttaacccttaataa 145  Q
    |||| |||||||||||| ||||||| ||||||| ||||||||  |||| ||| |||| | |||| |||||||||||| |||||    
T  43281866 aaaaaatctcattttatattttaggaactaaaatcaaaatttgttatattattaggatgaaaaacttatttaaccctaaataa 43281948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 105
Target Start/End: Original strand, 27002982 - 27003027
Alignment:
Q  60 gatgaaaacatctcattttattttttagggactaaaaacaaaattt 105  Q
    ||||| || |||||||||||||||||||||||||||| | ||||||    
T  27002982 gatgataatatctcattttattttttagggactaaaatccaaattt 27003027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 51 - 112
Target Start/End: Complemental strand, 158792 - 158731
Alignment:
Q  51 ttttgtgaagatgaaaacatctcattttattttttagggactaaaaacaaaatttaatatat 112  Q
    |||||||  |||||||||||||||||||||||||||||||| |||| |||||||| ||||||    
T  158792 ttttgtgtggatgaaaacatctcattttattttttagggaccaaaaccaaaatttgatatat 158731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 51 - 110
Target Start/End: Original strand, 15249582 - 15249641
Alignment:
Q  51 ttttgtgaagatgaaaacatctcattttattttttagggactaaaaacaaaatttaatat 110  Q
    |||||||| |||||||||||||||||||||||||||| ||| |||| |||||||| ||||    
T  15249582 ttttgtgaggatgaaaacatctcattttattttttagtgacgaaaatcaaaatttgatat 15249641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 52 - 105
Target Start/End: Complemental strand, 23757374 - 23757321
Alignment:
Q  52 tttgtgaagatgaaaacatctcattttattttttagggactaaaaacaaaattt 105  Q
    ||||||| ||||||||||||||||||||||||||||||| |||||  |||||||    
T  23757374 tttgtgaggatgaaaacatctcattttattttttagggattaaaattaaaattt 23757321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 60 - 140
Target Start/End: Complemental strand, 33757952 - 33757870
Alignment:
Q  60 gatgaaaacatctcattttattttttagggactaaaaacaaaatttaatata--tataaggacggaaaagttatttaaccctt 140  Q
    |||||||||||||||||| |||||| |  |||||||| ||||||||||||||  |||| ||| | |||| |||||||||||||    
T  33757952 gatgaaaacatctcatttcatttttgaaagactaaaatcaaaatttaatatatttatagggatgaaaaacttatttaaccctt 33757870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 51 - 112
Target Start/End: Original strand, 13515628 - 13515689
Alignment:
Q  51 ttttgtgaagatgaaaacatctcattttattttttagggactaaaaacaaaatttaatatat 112  Q
    ||||||||  |||||||||||| ||||||| |||||||||||||||  ||||||| ||||||    
T  13515628 ttttgtgactatgaaaacatctaattttatattttagggactaaaattaaaatttgatatat 13515689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 51 - 112
Target Start/End: Original strand, 13605161 - 13605222
Alignment:
Q  51 ttttgtgaagatgaaaacatctcattttattttttagggactaaaaacaaaatttaatatat 112  Q
    ||||||||  |||||||||||| ||||||| |||||||||||||||  ||||||| ||||||    
T  13605161 ttttgtgactatgaaaacatctaattttatattttagggactaaaattaaaatttgatatat 13605222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 52 - 105
Target Start/End: Complemental strand, 22210046 - 22209993
Alignment:
Q  52 tttgtgaagatgaaaacatctcattttattttttagggactaaaaacaaaattt 105  Q
    ||||||| ||||||||||||||||||||| ||||||| || |||| ||||||||    
T  22210046 tttgtgaggatgaaaacatctcattttatcttttaggaacaaaaatcaaaattt 22209993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 74 - 104
Target Start/End: Original strand, 10167723 - 10167753
Alignment:
Q  74 attttattttttagggactaaaaacaaaatt 104  Q
    |||||||||||||||||||||||||||||||    
T  10167723 attttattttttagggactaaaaacaaaatt 10167753  T

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Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 62 - 137
Target Start/End: Complemental strand, 14046536 - 14046461
Alignment:
Q  62 tgaaaacatctcattttattttttagggactaaaaacaaaatttaatata--tataaggacggaaaagttatttaacc 137  Q
    ||||||||| ||||||||||||| ||||||||||| |||| ||| |||||  |||||| || ||||||||||||||||    
T  14046536 tgaaaacatttcattttattttt-agggactaaaatcaaattttgatatatttataagaac-gaaaagttatttaacc 14046461  T

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Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 74 - 102
Target Start/End: Complemental strand, 15890131 - 15890103
Alignment:
Q  74 attttattttttagggactaaaaacaaaa 102  Q
    |||||||||||||||||||||||||||||    
T  15890131 attttattttttagggactaaaaacaaaa 15890103  T

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Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 74 - 143
Target Start/End: Original strand, 32374992 - 32375063
Alignment:
Q  74 attttattttttagggactaaaaacaaaa--tttaatatatataaggacggaaaagttatttaacccttaat 143  Q
    |||||||||| ||||||||||||||||||   | ||||| |||| ||||  |||| ||||||||||||||||    
T  32374992 attttattttgtagggactaaaaacaaaactgtgaatatttatagggactaaaaacttatttaacccttaat 32375063  T

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Target: scaffold0939 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0939
Description:

Target: scaffold0939; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 52 - 147
Target Start/End: Original strand, 707 - 804
Alignment:
Q  52 tttgtgaagatgaaaacatctcattttattttttagggactaaaaacaaaatt--taatatatataaggacggaaaagttatttaacccttaataaaa 147  Q
    ||||||| |||||||||| |||||| ||||||||||||| |||||  ||||||  | |||| |||| ||||| |||| ||||||||||||||| ||||    
T  707 tttgtgatgatgaaaacaactcattatattttttagggaataaaattaaaatttgttatatttatagggacgaaaaatttatttaacccttaaaaaaa 804  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 52 - 135
Target Start/End: Original strand, 4096768 - 4096853
Alignment:
Q  52 tttgtgaagatgaaaacatctcattttattttttagggactaaaaacaaaatttaa--tatatataaggacggaaaagttatttaa 135  Q
    ||||||| |||||||||||||||||| |||||||||||| ||||| |||||||| |  ||| |||| ||||| |||| ||||||||    
T  4096768 tttgtgatgatgaaaacatctcatttaattttttagggattaaaatcaaaatttgatttatttatagggacgaaaaatttatttaa 4096853  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 60 - 96
Target Start/End: Original strand, 1112026 - 1112062
Alignment:
Q  60 gatgaaaacatctcattttattttttagggactaaaa 96  Q
    |||||||||||||||||| |||||||||||| |||||    
T  1112026 gatgaaaacatctcatttaattttttagggattaaaa 1112062  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 62 - 141
Target Start/End: Original strand, 26386489 - 26386568
Alignment:
Q  62 tgaaaacatctcattttattttttagggactaaaaacaaaatttaatatatata-aggacggaaaagttatttaaccctta 141  Q
    ||||| |||||||||||||||||| ||| ||| || |||||||| |||||| || ||||  ||||| ||||||||||||||    
T  26386489 tgaaagcatctcattttattttttgggggctataatcaaaatttgatatatttatagga-agaaaacttatttaaccctta 26386568  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 74 - 143
Target Start/End: Complemental strand, 27771742 - 27771671
Alignment:
Q  74 attttattttttagggactaaaaacaaaa--tttaatatatataaggacggaaaagttatttaacccttaat 143  Q
    |||||||||| ||||||||||||||||||   | ||||| |||||||||  |||| ||||||||||| ||||    
T  27771742 attttattttgtagggactaaaaacaaaactgtgaatatttataaggactaaaaacttatttaacccataat 27771671  T

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Target: scaffold0191 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0191
Description:

Target: scaffold0191; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 74 - 106
Target Start/End: Original strand, 4451 - 4483
Alignment:
Q  74 attttattttttagggactaaaaacaaaattta 106  Q
    |||||||||| ||||||||||||||||||||||    
T  4451 attttattttgtagggactaaaaacaaaattta 4483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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