View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20041_low_6 (Length: 261)
Name: NF20041_low_6
Description: NF20041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20041_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 18 - 245
Target Start/End: Complemental strand, 32696637 - 32696410
Alignment:
| Q |
18 |
aagtcaactcacttgtacaagatatgccatttttcttacacccaacaaacccaaaacattcatccactttccggaaaaggactgtaaaaaactagatgtt |
117 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | |||||||| |||||||||||||||| |
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| T |
32696637 |
aagtcaactcacttgtacaagatatgccagttttcttacacccaacaaacccaaaacattcatccactttcggaaaaaggaccataaaaaactagatgtt |
32696538 |
T |
|
| Q |
118 |
gtcacaaccagtcacacataagtgagaatccaactgagtaattttactatgaaccgaattgtcttttgttaaaacttgataattcagtagttttcacgca |
217 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
32696537 |
gtcacaaccagtcacacataagtgagaatctaactgagtaattttactacaaaccgaattgtcttttgttaaaacttgataattcagtagttttcaggca |
32696438 |
T |
|
| Q |
218 |
aacaacaatatctttactagtactcttt |
245 |
Q |
| |
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|||||||||||||||||||||||||||| |
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| T |
32696437 |
aacaacaatatctttactagtactcttt |
32696410 |
T |
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