View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20041_low_7 (Length: 248)
Name: NF20041_low_7
Description: NF20041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20041_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 193; Significance: 1e-105; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 9 - 229
Target Start/End: Original strand, 46258226 - 46258446
Alignment:
| Q |
9 |
tgagatgaagcaaaacttagtcctcatgactccaagtgagatcctttctgacttataccaagataaaacaagaataattgtgcagaaaattcaggccctc |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
46258226 |
tgagatgaagcaaaacttagtcctcatgactccaagtgagatcctttctgacttataccaagataaaacaagaacaattgtgcagaaaattcaggccctc |
46258325 |
T |
|
| Q |
109 |
tcaatatagaaaaaccgacccttccaattacaaatggagatccacacacgagataccatgctcaattttannnnnnnnacatgatgttttattgatttta |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
46258326 |
tcaatatagaaaaaccgacccttccaattacaaatggagatccacacacgagataccatgctcaattttattttttttacatgatgttttattgatttta |
46258425 |
T |
|
| Q |
209 |
gtgtgacatgatacactatta |
229 |
Q |
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||||||||||||||||||||| |
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| T |
46258426 |
gtgtgacatgatacactatta |
46258446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 9 - 230
Target Start/End: Complemental strand, 46030146 - 46029925
Alignment:
| Q |
9 |
tgagatgaagcaaaacttagtcctcatgactccaagtgagatcctttctgacttataccaagataaaacaagaataattgtgcagaaaattcaggccctc |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
46030146 |
tgagatgaagcaaaacttagtcctcatgactccaagtgagatcctttctgacttataccaagataaaacaagaacaattgtgcagaaaattcaggccctc |
46030047 |
T |
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| Q |
109 |
tcaatatagaaaaaccgacccttccaattacaaatggagatccacacacgagataccatgctcaattttannnnnnnnacatgatgttttattgatttta |
208 |
Q |
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|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| |
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| T |
46030046 |
tcaatatagaaaaaccgaccctttcaattacaaatggagatccacacacgagatactatgctcaattttattttttttacatgatgttttattgatttta |
46029947 |
T |
|
| Q |
209 |
gtgtgacatgatacactattat |
230 |
Q |
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|||||||||||||||||||||| |
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| T |
46029946 |
gtgtgacatgatacactattat |
46029925 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 143
Target Start/End: Original strand, 49409740 - 49409804
Alignment:
| Q |
79 |
agaataattgtgcagaaaattcaggccctctcaatatagaaaaaccgacccttccaattacaaat |
143 |
Q |
| |
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|||| |||| ||||||||||||||||| || |||||||| ||||| || |||||||||||||| |
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|
| T |
49409740 |
agaaaaattctgcagaaaattcaggccatcccaatatagcaaaactgattgttccaattacaaat |
49409804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 56; Significance: 3e-23; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 74 - 169
Target Start/End: Complemental strand, 14949401 - 14949306
Alignment:
| Q |
74 |
aaacaagaataattgtgcagaaaattcaggccctctcaatatagaaaaaccgacccttccaattacaaatggagatccacacacgagataccatgc |
169 |
Q |
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||||||||| |||||||||||||||| |||||||| |||||||||| |||||||||| ||||||||||| ||||||||| | || |||||| |||| |
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| T |
14949401 |
aaacaagaacaattgtgcagaaaatttaggccctcccaatatagaagaaccgaccctgccaattacaaacggagatccatatacaagatacaatgc |
14949306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 74 - 164
Target Start/End: Complemental strand, 14939384 - 14939294
Alignment:
| Q |
74 |
aaacaagaataattgtgcagaaaattcaggccctctcaatatagaaaaaccgacccttccaattacaaatggagatccacacacgagatac |
164 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| |||||||||| |||||||||| ||||||||||| |||||| | |||| |||||| |
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| T |
14939384 |
aaacaagaataattgtgcagaaaatttaggccctcccaatatagaagaaccgaccctgccaattacaaacagagatctatacacaagatac |
14939294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 74 - 164
Target Start/End: Complemental strand, 14944628 - 14944538
Alignment:
| Q |
74 |
aaacaagaataattgtgcagaaaattcaggccctctcaatatagaaaaaccgacccttccaattacaaatggagatccacacacgagatac |
164 |
Q |
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|||||||||||||||||||||||||| |||||||| |||||||||| |||||||||| ||||||||||| |||||| | |||| |||||| |
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| T |
14944628 |
aaacaagaataattgtgcagaaaatttaggccctcccaatatagaagaaccgaccctgccaattacaaacagagatctatacacaagatac |
14944538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 60
Target Start/End: Original strand, 27179044 - 27179091
Alignment:
| Q |
13 |
atgaagcaaaacttagtcctcatgactccaagtgagatcctttctgac |
60 |
Q |
| |
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||||| ||||| || ||||||||||||||||||||||||||||||||| |
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| T |
27179044 |
atgaaccaaaatttggtcctcatgactccaagtgagatcctttctgac |
27179091 |
T |
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