View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20042_high_1 (Length: 722)
Name: NF20042_high_1
Description: NF20042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20042_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 559; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 559; E-Value: 0
Query Start/End: Original strand, 18 - 600
Target Start/End: Original strand, 40459938 - 40460519
Alignment:
| Q |
18 |
attgggataacttccaacacaacagactgatcaacaacagctgaaacactagtgttgttaaacagagacactatagcatagtagaaatttaataaatcac |
117 |
Q |
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| T |
40459938 |
attgggataa-ttccaacacaacagactgatcaacaacagctgaaacactagtgttgttaaacagagacactatagcatagtagaaatttaataaatcac |
40460036 |
T |
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| Q |
118 |
ttttgttcaatggtaagctagttaatacaaatgtgttctgaaaatgcctgctataacgacactacaccattgtagtggtggaaacaaatcgacatttact |
217 |
Q |
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| T |
40460037 |
ttttgttcaatggtaagctagttaatacaaatgtgttctgaaaatgcctgctataacgacactacaccattgtagtggtggaaacaaatcgacatttact |
40460136 |
T |
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| Q |
218 |
tgggggcaaggtctttaggatgttttggatcacaatcttttcacattattttgtctatgtatatgcttctgttgattaattatttcgatttatgtttcac |
317 |
Q |
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| T |
40460137 |
tgggggcaaggtctttaggatgttttggatcacaatcttttcacatttttttgtctatgtatatgcttctgttgattaattatttcgatttatgtttcac |
40460236 |
T |
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| Q |
318 |
atttttaacaatgtagttaaaattgataatggaaacatcatccgtctttcctctaatgatttatgctgccaaaaaattcccaattgggtacagttatttt |
417 |
Q |
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| T |
40460237 |
atttttaacaatgtagttaaaattgataatggaaacatcatccgtctttcctctaatgatttatgctgccaaaaaatttccaattgggtacagtcatttt |
40460336 |
T |
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| Q |
418 |
actttgacaatcagaacttgaaagacagttcctagtgtatcttggtaacttttgtttgctgtagataaaaagaaaaattataatgtaatgctttggaaat |
517 |
Q |
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| T |
40460337 |
actttgacaaccagaacttgaaagacagttcctagtgtatcttggtaacttttgtttgctgtagataaaaagaaaaattataatgtaatgctttggaaat |
40460436 |
T |
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| Q |
518 |
ttgattgatttgtgagagtttatagttgacaccgtgaaaaaatcgaatacttttaaatgtgtttggatgttgttttatggtat |
600 |
Q |
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| T |
40460437 |
ttgattgatttgtgagagtttatagttgacaccgtgaaaaaatcgaatacttttaaatgtgtttggatgttgttttatggtat |
40460519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 614 - 714
Target Start/End: Original strand, 40460547 - 40460644
Alignment:
| Q |
614 |
tttatgggttaacttttgggattgttcttaaaattgtgtgtggaagaggagagtttgacttacttattagtatatcgtttacttaccagtattagtatta |
713 |
Q |
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| T |
40460547 |
tttatgggttaacttttgggattgttcttaaaattttgtgtggaagaggagagtttgacttac---ttagtatatcgtttacttaccagtattagtatta |
40460643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 318 - 359
Target Start/End: Original strand, 40437896 - 40437937
Alignment:
| Q |
318 |
atttttaacaatgtagttaaaattgataatggaaacatcatc |
359 |
Q |
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| T |
40437896 |
atttttaataatgttgttaaaattgataatggaaacatcatc |
40437937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 318 - 359
Target Start/End: Complemental strand, 25457111 - 25457070
Alignment:
| Q |
318 |
atttttaacaatgtagttaaaattgataatggaaacatcatc |
359 |
Q |
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| T |
25457111 |
atttttaataatgttgttaaaattgataatggaaacatcatc |
25457070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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