View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20042_high_10 (Length: 476)
Name: NF20042_high_10
Description: NF20042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20042_high_10 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 455; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 18 - 476
Target Start/End: Original strand, 4394513 - 4394971
Alignment:
| Q |
18 |
ttcatctatatacttgttaattttacaccgcctatagaacctaagaacatagtttttgagatgaaaatggtaataagattaatgtgaataggacgtggtt |
117 |
Q |
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| T |
4394513 |
ttcatctatatacttgttaattttacaccgcctatagaacctaagaacatagtttttgagatgaaaatggtaataagattaatgtgaataggacgtggtt |
4394612 |
T |
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| Q |
118 |
agtgtaccatggtttttgggtcacgtgtgcatggctttattggcttaaatataggctttagtattagtttgacttttggtatctatagactatagttaag |
217 |
Q |
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| T |
4394613 |
agtgtaccatggtttttgggtcacgtgtgcatggctttattggcttaaatataggctttagtattagtttgacttttggtatctatagactatagttaag |
4394712 |
T |
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| Q |
218 |
gttgtatttagagttgaacatgagaaatgattgagtgtatctcaggcattggtgaaccaggtgttgctgcaaaatcagtggtgtttatcaatgatgtggc |
317 |
Q |
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| T |
4394713 |
gttgtatttagagttgcacatgagaaatgattgagtgtatctcaggcattggtgaaccaggtgttgctgcaaaatcagtggtgtttatcaatgatgtggc |
4394812 |
T |
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| Q |
318 |
ctttgaggttgcatctggaccttttaatgttcgtgcggcatttggtgatgatgctgttcttgtacatcaaactggtcagcctgtgttaacaaaccagtat |
417 |
Q |
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| T |
4394813 |
ctttgaggttgcatctggaccttttaatgttcgtgcggcatttggtgatgatgctgttcttgtacatcaaactggtcagcctgtgttaacaaaccagtat |
4394912 |
T |
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| Q |
418 |
ggtgtcactcttcattcactccagcatggtgcattatattatttggtaagcacgtaaac |
476 |
Q |
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| T |
4394913 |
ggtgtcactcttcattcactccagcatggtgcattatattatttggtaagcacgtaaac |
4394971 |
T |
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