View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20042_high_11 (Length: 396)
Name: NF20042_high_11
Description: NF20042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20042_high_11 |
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Alignment Details
Target: chr6 (Bit Score: 353; Significance: 0; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 19 - 379
Target Start/End: Complemental strand, 30946898 - 30946538
Alignment:
| Q |
19 |
tacaattattttaagtcatcttaaagtgcctcattggttctagacataattttgagggccggtcaatctcttatagtaatacgattcattttagtgattt |
118 |
Q |
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| T |
30946898 |
tacaattattttaagtcatcttaaagtgcctcattggttctagacataattttgagggccggtcaatctcttatagtaatacgattcattttagtgattt |
30946799 |
T |
|
| Q |
119 |
taccacatctgttttgagccacttgtgatctatagccattgtcaccatacgaaaatagtaatggatattggtaatgtagacatcttgcaagaaacttgtc |
218 |
Q |
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| T |
30946798 |
taccacatctgttttgagccacttgtgatctatagccattgtcaccatacgaaaatagtaatggatattggtaatgtagacatcttgcaagaaacttgtc |
30946699 |
T |
|
| Q |
219 |
tattctttgaagtttaccactttgagtttacataatcatataatttttatgtattatctacatctcttgcaataaaagcaacaacttttgatacagtcga |
318 |
Q |
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| T |
30946698 |
tattctttgaagtttaccactttgagtttacataattatataatttttatgtattatctacatctcttgcaataaaagcaacaacttttgatacagttga |
30946599 |
T |
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| Q |
319 |
ttgtcgaccgtatatgcttgtaacctttaattctattttgtatttcattcttggtattgta |
379 |
Q |
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| T |
30946598 |
ttgtcgaccgtatatgcttgtaacctttaattctattttgtatttcattcttggtattgta |
30946538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 30 - 259
Target Start/End: Complemental strand, 30962533 - 30962298
Alignment:
| Q |
30 |
taagtcatcttaaagtgcctcattggttctagacataattttgagggccggtcaatctcttatagtaatacgattcattttagtgattttaccacatctg |
129 |
Q |
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| T |
30962533 |
taagtcatagtaaagtgcctcaatggttctggacattattctgaaggttggtctttctcctataataatacgattctttttagcgattttaccacatttg |
30962434 |
T |
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| Q |
130 |
ttt------tgagccacttgtgatctatagccattgtcaccatacgaaaatagtaatggatattggtaatgtagacatcttgcaagaaacttgtctattc |
223 |
Q |
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| T |
30962433 |
ttgcctctatgtgcaacttcaggtctatagccatcctcgccataagaaaatagtaacggatattggtaatgtcgatgtctttcatgacactcatctattc |
30962334 |
T |
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| Q |
224 |
tttgaagtttaccactttgagtttacataatcatat |
259 |
Q |
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| T |
30962333 |
tttgaagtttaccactttgagtctgaataatcatat |
30962298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 53 - 245
Target Start/End: Complemental strand, 30932169 - 30931969
Alignment:
| Q |
53 |
tggttctagacataattttgagggccggtcaatctcttatagtaatacgattcattttagtgattttaccacatctgtttt------gagccacttgtga |
146 |
Q |
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| T |
30932169 |
tggttctgaacataattcggaaggccgatcattctcttatagtaatacgatttcttttagtggttttaccacattcgttatcgctatgagccacatcagg |
30932070 |
T |
|
| Q |
147 |
tctata--gccattgtcaccatacgaaaatagtaatggatattggtaatgtagacatcttgcaagaaacttgtctattctttgaagtttaccactttgag |
244 |
Q |
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| T |
30932069 |
tctatatagccatcctcaccataagaaaatagtaatgtatattggtaatgtagatatcatgcactacactcatctattctttgatgtttaccactttgag |
30931970 |
T |
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| Q |
245 |
t |
245 |
Q |
| |
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| |
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| T |
30931969 |
t |
30931969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 193 - 259
Target Start/End: Complemental strand, 30956940 - 30956874
Alignment:
| Q |
193 |
tgtagacatcttgcaagaaacttgtctattctttgaagtttaccactttgagtttacataatcatat |
259 |
Q |
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| T |
30956940 |
tgtagacatcttgcaagaaactcgtctgttcattgaagtttaccactttgagtttacataattatat |
30956874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 320 - 370
Target Start/End: Complemental strand, 30956836 - 30956786
Alignment:
| Q |
320 |
tgtcgaccgtatatgcttgtaacctttaattctattttgtatttcattctt |
370 |
Q |
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| T |
30956836 |
tgtcgactgtatatacttgtaaccttgcattctattttgtatttcattctt |
30956786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 90 - 144
Target Start/End: Complemental strand, 30956990 - 30956938
Alignment:
| Q |
90 |
tatagtaatacgattcattttagtgattttaccacatctgttttgagccacttgt |
144 |
Q |
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| T |
30956990 |
tatagtaatatgattcatattagtgattttatcaca--tgttttgagccacttgt |
30956938 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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