View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20042_high_13 (Length: 387)
Name: NF20042_high_13
Description: NF20042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20042_high_13 |
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Alignment Details
Target: chr5 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 4188522 - 4188313
Alignment:
| Q |
1 |
agaaaccgaacgacttgtggtggaagaatataaagatgacatcggtgggtcttttattgcaccaaatcaaccaaatagaaagtgacatgcacatggtctc |
100 |
Q |
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| T |
4188522 |
agaaaccgaacgacttgtggtggaagaatacaaagatgacatcggtgggtcttttattgcaccaaatcaaccaaatagaaagtgacatgcacatggtctc |
4188423 |
T |
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| Q |
101 |
tctatgtcttacaatgttatgttaactcagatattataagcttaatgaacacatttgactgcaaatatcccatttccgacacatcactatggttgattta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
4188422 |
tctatgtcttacaatgttatgttaactcagatattataagcttaatgaacacatttgaatgcaaatatcccatttccgacacatcactatggttgattta |
4188323 |
T |
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| Q |
201 |
gaagaagtgg |
210 |
Q |
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|||||||||| |
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| T |
4188322 |
gaagaagtgg |
4188313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 263 - 368
Target Start/End: Complemental strand, 4188260 - 4188155
Alignment:
| Q |
263 |
ggattgagttattatggaatgtaacgtgtggactgtattttgttgattgcagttctctaaaaaggcataataccgatagtggagaatagaagaggtgtgt |
362 |
Q |
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||||||||| | |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
4188260 |
ggattgagtgagtatggaatgtaacgtgtggactgtattttgttgattccagttctctaaaaaggcataataccgatagtggagaatagaagaggtttgt |
4188161 |
T |
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| Q |
363 |
ggacac |
368 |
Q |
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|||||| |
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| T |
4188160 |
ggacac |
4188155 |
T |
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