View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20042_high_21 (Length: 295)
Name: NF20042_high_21
Description: NF20042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20042_high_21 |
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Alignment Details
Target: chr7 (Bit Score: 182; Significance: 2e-98; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 91 - 280
Target Start/End: Original strand, 37090706 - 37090895
Alignment:
| Q |
91 |
aaaatccaatattagacctatttctaacacttgtcatacttctcaaccttcctttccctaaatgatgctcacaaagtgaataaccaacaagtgtttgttg |
190 |
Q |
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| T |
37090706 |
aaaatccaatattagatctatttctaacacttgtcatacttctcaatcttcctttccctaaatgatgctcacaaagtgaataaccaacaagtgtttgttg |
37090805 |
T |
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| Q |
191 |
acaacatctccatcctcttccattaacacgactgcaccttgaaccttccatcactgcacttcccctttttgtcaccttcttcttaatatt |
280 |
Q |
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| T |
37090806 |
acaacatctccatcctcttccattaacacgactgcaccttgaaccttccatcactgcacttcccctttttgtcaccttcttcttaatatt |
37090895 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 91 - 280
Target Start/End: Original strand, 37097073 - 37097262
Alignment:
| Q |
91 |
aaaatccaatattagacctatttctaacacttgtcatacttctcaaccttcctttccctaaatgatgctcacaaagtgaataaccaacaagtgtttgttg |
190 |
Q |
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| T |
37097073 |
aaaatccaatattagatctatttctaacacttgtcatacttctcaatcttcctttccctaaatgatgctcacaaagtgaataaccaacaagtgtttgttg |
37097172 |
T |
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| Q |
191 |
acaacatctccatcctcttccattaacacgactgcaccttgaaccttccatcactgcacttcccctttttgtcaccttcttcttaatatt |
280 |
Q |
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| T |
37097173 |
acaacatctccatcctcttccattaacacgactgcaccttgaaccttccatcactgcacttcccctttttgtcaccttcttcttaatatt |
37097262 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 56
Target Start/End: Original strand, 37090640 - 37090677
Alignment:
| Q |
19 |
tttcaagatcagaattagaagatgaagcactatcaaca |
56 |
Q |
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| T |
37090640 |
tttcaagatcagaattagaagatgaagcactatcaaca |
37090677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 56
Target Start/End: Original strand, 37097007 - 37097044
Alignment:
| Q |
19 |
tttcaagatcagaattagaagatgaagcactatcaaca |
56 |
Q |
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| T |
37097007 |
tttcaagatcagaattagaagatgaagcactatcaaca |
37097044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 99; Significance: 7e-49; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 103 - 241
Target Start/End: Original strand, 23187296 - 23187434
Alignment:
| Q |
103 |
tagacctatttctaacacttgtcatacttctcaaccttcctttccctaaatgatgctcacaaagtgaataaccaacaagtgtttgttgacaacatctcca |
202 |
Q |
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||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||| || |||||||||||||| ||||| |
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| T |
23187296 |
tagacctatttcttacacttgtcatgcttctcaatcttcctttccctaaatgatgctcacaaagagaataaccaactagggtttgttgacaacacctcca |
23187395 |
T |
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| Q |
203 |
tcctcttccattaacacgactgcaccttgaaccttccat |
241 |
Q |
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| T |
23187396 |
tcctcttccattaactcgactgcaccgcgaaccttccat |
23187434 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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