View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20042_high_22 (Length: 281)
Name: NF20042_high_22
Description: NF20042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20042_high_22 |
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Alignment Details
Target: chr6 (Bit Score: 245; Significance: 1e-136; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 269
Target Start/End: Original strand, 26807799 - 26808067
Alignment:
| Q |
1 |
tgtataccaggttgaacgaatatggttggacgggtttctcaaactaaactgtttttactagaacagaactttctgatctacaaaaagtaattcgggataa |
100 |
Q |
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| T |
26807799 |
tgtataccaggttgaacgactatggttggacgggtttctcaaactaaactgtttttactagaaaagaactttctgatatacaaaaagtaattcgggataa |
26807898 |
T |
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| Q |
101 |
agaactgaactcgagacgcaacacttatttggtctttttcaagagttgcgacttttctccggaatccaagtgtaatgaaagtaattggtatagctcaagc |
200 |
Q |
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| T |
26807899 |
agaactgaactcgagacgcaacacttatttggtctttttcaagagtcgcgacttttctccggaatccaagtgtaatgaaagttattggtatagctcaagc |
26807998 |
T |
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| Q |
201 |
actgctctggtcttgaaatggtgagacctgatgtatgttcttacgacggatgtttgtgttgcagatatt |
269 |
Q |
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| T |
26807999 |
actgctctggtcttgaaatggtgagacccgatgtatgttcttacgacggatgtttgtgttgcagatatt |
26808067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 15 - 90
Target Start/End: Complemental strand, 27599891 - 27599816
Alignment:
| Q |
15 |
aacgaatatggttggacgggtttctcaaactaaactgtttttactagaacagaactttctgatctacaaaaagtaa |
90 |
Q |
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| T |
27599891 |
aacgactatggttggacgggtttatcaaacttaactgtccttactgcaaaagagctttctcctctacaaaaagtaa |
27599816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 109
Target Start/End: Original strand, 26910148 - 26910202
Alignment:
| Q |
55 |
ttactagaacagaactttctgatctacaaaaagtaattcgggataaagaactgaa |
109 |
Q |
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| T |
26910148 |
ttactggaaaagagctttctgatctacacaaagtaacgcgggataaagaactgaa |
26910202 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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