View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20042_high_28 (Length: 227)
Name: NF20042_high_28
Description: NF20042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20042_high_28 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 51510380 - 51510606
Alignment:
| Q |
1 |
tcagagtataaccgatttgacgccggtacatgtagttacgtccaataattactagttttcaaattattatcggtgtcgtgttgaggcatatgtgtcggtg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
51510380 |
tcagagtataaccgatttgacgccggtacatgtagttacgtccaataattactagttttcaaattattatcggtgtcgtgttgaggcatttgtgtcggtg |
51510479 |
T |
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| Q |
101 |
cttcatagacaaggcaatgccttgaaagactgtattggtagtagtagcataccatttcctgaaccagtaaagacaaaaacgagaggacaaatccccaatg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51510480 |
cttcatagacaaggcaatgccttgaaagactgtattggtagtagtagcataccatttcctgaaccagtaaagacaaaaacgagaggacaaatccccaatg |
51510579 |
T |
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| Q |
201 |
gcaatccttgagttgcaatttcttcac |
227 |
Q |
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||||||||||||||| ||||||||||| |
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| T |
51510580 |
gcaatccttgagttgaaatttcttcac |
51510606 |
T |
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