View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20042_high_4 (Length: 595)
Name: NF20042_high_4
Description: NF20042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20042_high_4 |
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| [»] scaffold0017 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 528; Significance: 0; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 528; E-Value: 0
Query Start/End: Original strand, 20 - 583
Target Start/End: Complemental strand, 746490 - 745927
Alignment:
| Q |
20 |
gagtaggcatagcaataggatatgattgcattatcattgcatttccattgtaatagtatgatggcaagtttttatcatttttaacttcatccttcttctt |
119 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
746490 |
gagtaggcatagcaataggatatgattgcattatcattgcatttccattgtaatagtatgatggcaagtttttgtcatttttaacttcatccttcttctt |
746391 |
T |
|
| Q |
120 |
cataccgatttttgaatcataggtaacattagcatcaatatgcttgctagggcaatagtaggagctttgtgcacttgaaaccataagagaatgttgagag |
219 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
746390 |
catactgatttttgaatcataggtaacattagcatcaatatgcttgctagggtaatagtaggagctttgtgcactggaaaccataagagaatgttgagag |
746291 |
T |
|
| Q |
220 |
ctttgtcccaatcgaattggccaaaaccctaagggatttttatcacaaatattcatcaatggagagtaaattttctcttgagatatgttggtatgcatga |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
746290 |
ctttgtcccaatcgaattggccaaaaccctaagggatttttatcacaaatattcatcaatggagagtaaattttaacttgagatatgttggtatgcatga |
746191 |
T |
|
| Q |
320 |
gattgaagttggtacctgaatttgaggtcaagtaaggagaactaataaggttattgaccttgtatgattcatcttttcgcatattcatcttttgatcaca |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
746190 |
gattgaagttggtacctgaatttgaggtcaagtaaggagaactaataaggttattgaccttgtatgattcatcttttcgcatattcatcttttgatcaca |
746091 |
T |
|
| Q |
420 |
tgcgtcaagcttagaatccaaaaacctaacaaatgacctcaattgttcatatccaaaagaattgtaagattcatcccaagttggatacttcatctttaac |
519 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
746090 |
tgcgtcaagcttagaatccaaaaacctaacaaatgacctcaattgttcatttccaaaagaattgtaagattcatcccaagttggatacttcatctttaac |
745991 |
T |
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| Q |
520 |
ctctctttacgcactttgtaaatctccgattcaacttttttcatcctctccttaaaatattctt |
583 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| |
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| T |
745990 |
ctctctttacgcactttgtaaatctccaattcaacttttttcatcctttccttaaaatattctt |
745927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 398 - 583
Target Start/End: Complemental strand, 752015 - 751830
Alignment:
| Q |
398 |
gcatattcatcttttgatcacatgcgtcaagcttagaatccaaaaacctaacaaatgacctcaattgttcatatccaaaagaattgtaagattcatccca |
497 |
Q |
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|||||||||||||| ||| ||||| ||||||||| ||||||| | ||| ||||| |||| |||||||||| | ||| | ||||| | ||||||||||| |
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| T |
752015 |
gcatattcatctttagattgcatgcatcaagcttaaaatccaagatgctagcaaataaccttaattgttcatcttcaagaaaattgaatgattcatccca |
751916 |
T |
|
| Q |
498 |
agttggatacttcatctttaacctctctttacgcactttgtaaatctccgattcaacttttttcatcctctccttaaaatattctt |
583 |
Q |
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|||| ||||||||||||| ||| ||||||| ||||||||| ||||||| ||||||||||||||||||| || ||||||||||||| |
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| T |
751915 |
agtttgatacttcatcttaaacttctctttgcgcactttggaaatctcaaattcaacttttttcatcctttctttaaaatattctt |
751830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 392 - 583
Target Start/End: Original strand, 7327412 - 7327603
Alignment:
| Q |
392 |
cttttcgcatattcatcttttgatcacatgcgtcaagcttagaatccaaaaacctaacaaatgacctcaattgttcatatccaaaagaattgtaagattc |
491 |
Q |
| |
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||||| |||||| |||| |||||| ||| || |||||||| |||||||| | ||| |||||||||||| |||||| ||||| |||||||||||||| |
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| T |
7327412 |
cttttagcatatgcatcctttgattacaagcatcaagcttggaatccaacatgctagcaaatgacctcacttgttccactccaagtgaattgtaagattc |
7327511 |
T |
|
| Q |
492 |
atcccaagttggatacttcatctttaacctctctttacgcactttgtaaatctccgattcaacttttttcatcctctccttaaaatattctt |
583 |
Q |
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|||||| | ||||||| ||||||||| | ||||||| ||||||||| ||||||| ||| || |||||||||||| ||||||||||| |||| |
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| T |
7327512 |
atcccaggatggatacatcatctttatcttctctttgcgcactttggaaatctcaaatttaatttttttcatcctttccttaaaatactctt |
7327603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 181 - 373
Target Start/End: Complemental strand, 752259 - 752067
Alignment:
| Q |
181 |
gagctttgtgcacttgaaaccataagagaatgttgagagctttgtcccaatcgaattggccaaaaccctaagggatttttatcacaaatattcatcaatg |
280 |
Q |
| |
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|||||||||||| ||||||||||| |||| |||||||||||||||| || || ||||||||||||||| || ||||||||| ||||||||||||| |
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| T |
752259 |
gagctttgtgcagttgaaaccatatgagagggttgagagctttgtcctgatataagtggccaaaaccctaaagggtttttatcattgatattcatcaatg |
752160 |
T |
|
| Q |
281 |
gagagtaaattttctcttgagatatgttggtatgcatgagattgaagttggtacctgaatttgaggtcaagtaaggagaactaataaggttat |
373 |
Q |
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| T |
752159 |
gtggataaatgtgtgcttgagacatgttgttttgcgggagattgaagtagctacttggatttgagtccaagtaaggagaactattaaggttat |
752067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 19 - 117
Target Start/End: Complemental strand, 752490 - 752392
Alignment:
| Q |
19 |
agagtaggcatagcaataggatatgattgcattatcattgcatttccattgtaatagtatgatggcaagtttttatcatttttaacttcatccttcttc |
117 |
Q |
| |
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||||||| ||||||||||||||||||||||||||||||| |||||| ||||||||| |||| ||||| |||||||||||| | |||||||||||||| |
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| T |
752490 |
agagtagacatagcaataggatatgattgcattatcattccatttctattgtaataatatggtggcagaattttatcattttcagcttcatccttcttc |
752392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 26 - 131
Target Start/End: Original strand, 7326953 - 7327058
Alignment:
| Q |
26 |
gcatagcaataggatatgattgcattatcattgcatttccattgtaatagtatgatggcaagtttttatcatttttaacttcatccttcttcttcatacc |
125 |
Q |
| |
|
||||||||| ||||||||||||||| || ||||||||||||||||||||||| || ||||||| |||||||| | || |||||||| | |||||| | |
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| T |
7326953 |
gcatagcaaaaggatatgattgcatcgtcgatgcatttccattgtaatagtatggtgataagttttcatcattttcagctacatccttccttttcatatc |
7327052 |
T |
|
| Q |
126 |
gatttt |
131 |
Q |
| |
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|||||| |
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|
| T |
7327053 |
gatttt |
7327058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 175 - 328
Target Start/End: Original strand, 7327168 - 7327321
Alignment:
| Q |
175 |
tagtaggagctttgtgcacttgaaaccataagagaatgttgagagctttgtcccaatcgaattggccaaaaccctaagggatttttatcacaaatattca |
274 |
Q |
| |
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||||| |||||||| ||| | |||| |||| |||| |||||||||||||||| | | ||| | ||||||||||||| || |||||||| |||||||| |
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| T |
7327168 |
tagtatgagctttgcgcattggaaatcatagaagaaggttgagagctttgtccgagttgaagttgccaaaaccctaatggggttttatcattaatattca |
7327267 |
T |
|
| Q |
275 |
tcaatggagagtaaattttctcttgagatatgttggtatgcatgagattgaagt |
328 |
Q |
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||||||||| | |||||| ||| | | |||||| | |||||||||||||||| |
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| T |
7327268 |
tcaatggaggatgaatttttgcttcaaacatgttgttttgcatgagattgaagt |
7327321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 177 - 225
Target Start/End: Complemental strand, 752299 - 752251
Alignment:
| Q |
177 |
gtaggagctttgtgcacttgaaaccataagagaatgttgagagctttgt |
225 |
Q |
| |
|
|||| ||||||||||||| ||||||||| ||||| |||||||||||||| |
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|
| T |
752299 |
gtagaagctttgtgcactagaaaccataggagaaggttgagagctttgt |
752251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 57; Significance: 2e-23; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 207 - 391
Target Start/End: Original strand, 51792290 - 51792474
Alignment:
| Q |
207 |
agaatgttgagagctttgtcccaatcgaattggccaaaaccctaagggatttttatcacaaatattcatcaatggagagtaaattttctcttgagatatg |
306 |
Q |
| |
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|||| ||||||||||||||||| || ||| |||||||||||||||||| |||||||||| ||||||||||| ||||| ||| ||| ||||||| ||| |
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| T |
51792290 |
agaaggttgagagctttgtcccgattgaagtggccaaaaccctaaggggtttttatcactaatattcatcattggaggataagtttgtgcttgagacatg |
51792389 |
T |
|
| Q |
307 |
ttggtatgcatgagattgaagttggtacctgaatttgaggtcaagtaaggagaactaataaggttattgaccttgtatgattcat |
391 |
Q |
| |
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| |||||||||||||||| | || || ||||| ||||||| |||||| ||| ||||| |||| ||||||| |||||||| |
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| T |
51792390 |
gaattttgcatgagattgaagtagtaacttggatttggggtcaaggaaggagtactgataagtttatctaccttgtgtgattcat |
51792474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 458 - 583
Target Start/End: Original strand, 51792568 - 51792693
Alignment:
| Q |
458 |
tcaattgttcatatccaaaagaattgtaagattcatcccaagttggatacttcatctttaacctctctttacgcactttgtaaatctccgattcaacttt |
557 |
Q |
| |
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|||||||||| ||||| ||||||| ||||||||| ||||||||||||| ||||||||||| ||||||||||||||||| |||||| |||||| ||| |
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| T |
51792568 |
tcaattgttccgctccaagagaattgaaagattcattccaagttggatacatcatctttaacttctctttacgcactttggtaatctcgaattcaagttt |
51792667 |
T |
|
| Q |
558 |
tttcatcctctccttaaaatattctt |
583 |
Q |
| |
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| | || || ||||||||||| |||| |
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| T |
51792668 |
tctaattctttccttaaaatactctt |
51792693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 26 - 73
Target Start/End: Original strand, 51792034 - 51792081
Alignment:
| Q |
26 |
gcatagcaataggatatgattgcattatcattgcatttccattgtaat |
73 |
Q |
| |
|
|||||| ||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
51792034 |
gcatagtaataggatatgattgcattgtcattgcatttccattgtaat |
51792081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0017 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0017
Description:
Target: scaffold0017; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 21 - 76
Target Start/End: Original strand, 38237 - 38292
Alignment:
| Q |
21 |
agtaggcatagcaataggatatgattgcattatcattgcatttccattgtaatagt |
76 |
Q |
| |
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|||| |||| || |||||||||||||||||| ||||||||||||||| ||||||| |
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| T |
38237 |
agtatgcattgcgataggatatgattgcattggcattgcatttccattataatagt |
38292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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