View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20042_high_7 (Length: 501)
Name: NF20042_high_7
Description: NF20042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20042_high_7 |
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Alignment Details
Target: chr3 (Bit Score: 265; Significance: 1e-147; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 220 - 488
Target Start/End: Original strand, 52844073 - 52844341
Alignment:
| Q |
220 |
aaccctcaaattctcaaaggtcagcatccatgtaatcctgtgttcgacaaatagtaagtaaaacatgaccgaatattgttcaactcacgaatcaaacttg |
319 |
Q |
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| T |
52844073 |
aaccctcaaattctcaaaggtcagcatccatgtaatcctgtgttcgacaaatagtaagtaaaacatgaccgaatattgttcaactcacgaatcaaacttg |
52844172 |
T |
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| Q |
320 |
gaatccccgaacattttcattgtttcgtgaatctcattaactacttgagtcaaatcacatggttacatgaatattaatatgattgatagattttgaagca |
419 |
Q |
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| T |
52844173 |
gaatccccgaacattttcattgtttcgtgaatctcattaactacttgagtcaaatcacatggttacatgaatattaatatgattgatagattttgaagca |
52844272 |
T |
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| Q |
420 |
ttttgttttttgaattcctactcatattttatagatgatttgttggaagcagatagggtatttggagaa |
488 |
Q |
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| T |
52844273 |
ttttgttttttgaattcctactcatattttatcgatgatttgttggaagcagatagggtatttggagaa |
52844341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 21 - 191
Target Start/End: Original strand, 52843874 - 52844044
Alignment:
| Q |
21 |
gcaggatgtttcagaatgggaatgtgtttctcatagcacgatcaaattcaagaacaatggtcatgcagaacagcgatcatcgccggatacatatacattt |
120 |
Q |
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| T |
52843874 |
gcaggatgtttcagaatgggaatgtgtttctcatagcacgatcaaattcaagaacaatggtcatgcagaacagcgatcatcgccggatacatatacattt |
52843973 |
T |
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| Q |
121 |
ggtagtaaacatgttcattatgttgatttgtttgttgtagttataatttattaaactttgtaatacataaa |
191 |
Q |
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| T |
52843974 |
ggtagtaaacatgttcattatgttgatttgtttgttgtagttataatttatgaaactttgtaatacataaa |
52844044 |
T |
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