View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20042_low_10 (Length: 484)

Name: NF20042_low_10
Description: NF20042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20042_low_10
NF20042_low_10
[»] chr6 (1 HSPs)
chr6 (1-470)||(28599407-28599879)
[»] chr7 (9 HSPs)
chr7 (4-191)||(9249523-9249707)
chr7 (4-191)||(9276392-9276576)
chr7 (4-191)||(9283073-9283257)
chr7 (4-191)||(9294044-9294228)
chr7 (318-438)||(9268384-9268504)
chr7 (316-418)||(9249330-9249432)
chr7 (316-418)||(9276199-9276301)
chr7 (316-418)||(9282880-9282982)
chr7 (316-418)||(9293851-9293953)
[»] chr1 (1 HSPs)
chr1 (79-187)||(13442829-13442937)


Alignment Details
Target: chr6 (Bit Score: 407; Significance: 0; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 1 - 470
Target Start/End: Complemental strand, 28599879 - 28599407
Alignment:
Q  1 tgaatgaagcagccagaaggaagacgatgacatcgaaactgaggagcaaattggttgtcatgaggaaaatcatatgaaacatcaacaattgcccataaac 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  28599879 tgaatgaagcagccagaaggaagacgatgacatcgaaactgaggagcaaattggttgtcatgaggaaaatcataggaaacatcaacaattgcccataaac 28599780  T
Q  101 cttgctcaatttgcgtacagtaacgcaagaagtagaattctctgataggaacaagtggtgacagcacttgcaactcctcatacatctaaaattttcnnnn 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        
T  28599779 cttgctcaatttgcgtacagtaacgcaagaagtagaattctctgataggaacaagtggtgacagcacttgcaactcctcatacatctaaaattttcaaaa 28599680  T
Q  201 nnnnnnnnnc--tgaattaagataattcattgttgaatagaaattggcatgaatataaagataaaa-tcgtgttcgaaaaattttctgttgtcaaaatat 297  Q
                |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  28599679 aaaaacaaaaattgaattaagataattcattgttgaatagaaattggcatgaatataaagataaaaatcgtgttcgaaaaattttctgttgtcaaaatat 28599580  T
Q  298 ctatctatagttttttaacataccaattgcatagaaccactaggaccgcccatcattccggaagagataacttcaatagtccttgccatagtcacaatag 397  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28599579 ctatctatagttttttaacataccaattgcatagaaccactaggaccgcccatcattccggaagagataacttcaatagtccttgccatagtcacaatag 28599480  T
Q  398 taggaaatagagccatccactggttctgaaaaatcaatcatgaaatttcataagttaattaaattgtagttat 470  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28599479 taggaaatagagccatccactggttctgaaaaatcaatcatgaaatttcataagttaattaaattgtagttat 28599407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 82; Significance: 2e-38; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 4 - 191
Target Start/End: Complemental strand, 9249707 - 9249523
Alignment:
Q  4 atgaagcagccagaaggaagacgatgacatcgaaactgaggagcaaattggttgtcatgaggaaaatcatatgaaacatcaacaattgcccataaacctt 103  Q
    |||||||| || |||||||||||||| | |||||| |  | |||||| || |||| ||||||||| ||||||||||||||||| |||||||||   ||||    
T  9249707 atgaagcaaccggaaggaagacgatggcctcgaaatttcgaagcaaaatgtttgttatgaggaaattcatatgaaacatcaactattgcccat---cctt 9249611  T
Q  104 gctcaatttgcgtacagtaacgcaagaagtagaattctctgataggaacaagtggtgacagcacttgcaactcctcatacatctaaaa 191  Q
     ||||| |||  |||| ||||| | ||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||    
T  9249610 cctcaaattgtttacaataacgtaggaagtagaattctctaataggaacaagtggtgaaagcacttgcaactcttcatacatctaaaa 9249523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 4 - 191
Target Start/End: Complemental strand, 9276576 - 9276392
Alignment:
Q  4 atgaagcagccagaaggaagacgatgacatcgaaactgaggagcaaattggttgtcatgaggaaaatcatatgaaacatcaacaattgcccataaacctt 103  Q
    |||||||| || |||||||||||||| | |||||| |  | |||||| || |||| ||||||||| ||||||||||||||||| |||||||||   ||||    
T  9276576 atgaagcaaccggaaggaagacgatggcctcgaaatttcgaagcaaaatgtttgttatgaggaaattcatatgaaacatcaactattgcccat---cctt 9276480  T
Q  104 gctcaatttgcgtacagtaacgcaagaagtagaattctctgataggaacaagtggtgacagcacttgcaactcctcatacatctaaaa 191  Q
     ||||| |||  |||| ||||| | ||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||    
T  9276479 cctcaaattgtttacaataacgtaggaagtagaattctctaataggaacaagtggtgaaagcacttgcaactcttcatacatctaaaa 9276392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 4 - 191
Target Start/End: Complemental strand, 9283257 - 9283073
Alignment:
Q  4 atgaagcagccagaaggaagacgatgacatcgaaactgaggagcaaattggttgtcatgaggaaaatcatatgaaacatcaacaattgcccataaacctt 103  Q
    |||||||| || |||||||||||||| | |||||| |  | |||||| || |||| ||||||||| ||||||||||||||||| |||||||||   ||||    
T  9283257 atgaagcaaccggaaggaagacgatggcctcgaaatttcgaagcaaaatgtttgttatgaggaaattcatatgaaacatcaactattgcccat---cctt 9283161  T
Q  104 gctcaatttgcgtacagtaacgcaagaagtagaattctctgataggaacaagtggtgacagcacttgcaactcctcatacatctaaaa 191  Q
     ||||| |||  |||| ||||| | ||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||    
T  9283160 cctcaaattgtttacaataacgtaggaagtagaattctctaataggaacaagtggtgaaagcacttgcaactcttcatacatctaaaa 9283073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 4 - 191
Target Start/End: Complemental strand, 9294228 - 9294044
Alignment:
Q  4 atgaagcagccagaaggaagacgatgacatcgaaactgaggagcaaattggttgtcatgaggaaaatcatatgaaacatcaacaattgcccataaacctt 103  Q
    |||||||| || |||||||||||||| | |||||| |  | |||||| || |||| ||||||||| ||||||||||||||||| |||||||||   ||||    
T  9294228 atgaagcaaccggaaggaagacgatggcctcgaaatttcgaagcaaaatgtttgttatgaggaaattcatatgaaacatcaactattgcccat---cctt 9294132  T
Q  104 gctcaatttgcgtacagtaacgcaagaagtagaattctctgataggaacaagtggtgacagcacttgcaactcctcatacatctaaaa 191  Q
     ||||| |||  |||| ||||| | ||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||    
T  9294131 cctcaaattgtttacaataacgtaggaagtagaattctctaataggaacaagtggtgaaagcacttgcaactcttcatacatctaaaa 9294044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 318 - 438
Target Start/End: Complemental strand, 9268504 - 9268384
Alignment:
Q  318 taccaattgcatagaaccactaggaccgcccatcattccggaagagataacttcaatagtccttgccatagtcacaatagtaggaaatagagccatccac 417  Q
    ||||||||||| |||||||||| ||||  || || |||  ||||| ||||||||||||||| |||| || ||||||||||| ||||||||  ||||||||    
T  9268504 taccaattgcaaagaaccactaagaccatccttcgttcgagaagatataacttcaatagtctttgcgattgtcacaatagttggaaatagctccatccac 9268405  T
Q  418 tggttctgaaaaatcaatcat 438  Q
    | |||||  ||||||||||||    
T  9268404 ttgttctacaaaatcaatcat 9268384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 316 - 418
Target Start/End: Complemental strand, 9249432 - 9249330
Alignment:
Q  316 cataccaattgcatagaaccactaggaccgcccatcattccggaagagataacttcaatagtccttgccatagtcacaatagtaggaaatagagccatcc 415  Q
    ||||||||||||| |||||||  | ||||  || || |||  ||||| ||||||||||||||| |||| || ||||||||||| ||||||||  ||||||    
T  9249432 cataccaattgcaaagaaccatcaagaccatccttcgttcgagaagatataacttcaatagtctttgcgattgtcacaatagttggaaatagctccatcc 9249333  T
Q  416 act 418  Q
    |||    
T  9249332 act 9249330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 316 - 418
Target Start/End: Complemental strand, 9276301 - 9276199
Alignment:
Q  316 cataccaattgcatagaaccactaggaccgcccatcattccggaagagataacttcaatagtccttgccatagtcacaatagtaggaaatagagccatcc 415  Q
    ||||||||||||| |||||||  | ||||  || || |||  ||||| ||||||||||||||| |||| || ||||||||||| ||||||||  ||||||    
T  9276301 cataccaattgcaaagaaccatcaagaccatccttcgttcgagaagatataacttcaatagtctttgcgattgtcacaatagttggaaatagctccatcc 9276202  T
Q  416 act 418  Q
    |||    
T  9276201 act 9276199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 316 - 418
Target Start/End: Complemental strand, 9282982 - 9282880
Alignment:
Q  316 cataccaattgcatagaaccactaggaccgcccatcattccggaagagataacttcaatagtccttgccatagtcacaatagtaggaaatagagccatcc 415  Q
    ||||||||||||| |||||||  | ||||  || || |||  ||||| ||||||||||||||| |||| || ||||||||||| ||||||||  ||||||    
T  9282982 cataccaattgcaaagaaccatcaagaccatccttcgttcgagaagatataacttcaatagtctttgcgattgtcacaatagttggaaatagctccatcc 9282883  T
Q  416 act 418  Q
    |||    
T  9282882 act 9282880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 316 - 418
Target Start/End: Complemental strand, 9293953 - 9293851
Alignment:
Q  316 cataccaattgcatagaaccactaggaccgcccatcattccggaagagataacttcaatagtccttgccatagtcacaatagtaggaaatagagccatcc 415  Q
    ||||||||||||| |||||||  | ||||  || || |||  ||||| ||||||||||||||| |||| || ||||||||||| ||||||||  ||||||    
T  9293953 cataccaattgcaaagaaccatcaagaccatccttcgttcgagaagatataacttcaatagtctttgcgattgtcacaatagttggaaatagctccatcc 9293854  T
Q  416 act 418  Q
    |||    
T  9293853 act 9293851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 73; Significance: 4e-33; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 79 - 187
Target Start/End: Original strand, 13442829 - 13442937
Alignment:
Q  79 acatcaacaattgcccataaaccttgctcaatttgcgtacagtaacgcaagaagtagaattctctgataggaacaagtggtgacagcacttgcaactcct 178  Q
    |||||||||| |||||||||||||||||||||||||||||||||||| | ||||||| |||||||||||| ||||| ||||||||||  ||||||||| |    
T  13442829 acatcaacaactgcccataaaccttgctcaatttgcgtacagtaacgtaggaagtaggattctctgatagaaacaattggtgacagcctttgcaactctt 13442928  T
Q  179 catacatct 187  Q
    |||||||||    
T  13442929 catacatct 13442937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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