View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20042_low_15 (Length: 380)
Name: NF20042_low_15
Description: NF20042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20042_low_15 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 321; Significance: 0; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 17 - 364
Target Start/End: Complemental strand, 2866254 - 2865906
Alignment:
| Q |
17 |
ttaagaataggcgactaaagctttacaccaacaatagcggttgttggtggatctcaggatggagtcacacaa-ttttgcgcaccctgcaaggtttgaaac |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| || || ||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
2866254 |
ttaagaataggcgactaaagctttacaccaacaatagcggttgttggtggatgtcggggtggagtcacacaaattttgcgcaccctgcaaggtttgaaac |
2866155 |
T |
|
| Q |
116 |
acttgctatggaaccggagaagaaagaagagatcataaacgatcttattaaattcaagaaagggaaagagtattatgctaaagttggaaaggcttggaaa |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2866154 |
acttgctatggaaccggagaagaaagaagagatcataaacgatcttgttaaattcaagaaagggaaagagtattatgctaaagttggaaaggcttggaaa |
2866055 |
T |
|
| Q |
216 |
cggggttatctactctatggtccaccaggaactgggaaatctaccatgatatctgctattgcaaatttcatgaactacgatgtatatgatcttgaattaa |
315 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2866054 |
cgcggttatctactctatggtccaccaggaactgggaaatctaccatgatatctgctattgcaaatttcatgaactacgatgtatatgatcttgaattaa |
2865955 |
T |
|
| Q |
316 |
caactgtcaaggataacaatgagttgaaaacacttttgattgagacgtc |
364 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2865954 |
caactgtcaaggataacaatgagttgaaaacacttttgattgagacgtc |
2865906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 17 - 364
Target Start/End: Complemental strand, 2860875 - 2860527
Alignment:
| Q |
17 |
ttaagaataggcgactaaagctttacaccaacaatagcggttgttggtggatctcaggatggagtcacacaa-ttttgcgcaccctgcaaggtttgaaac |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| |||||| |||||||||||||||||||| |
|
|
| T |
2860875 |
ttaagaataggcgactaaagctttacaccaacaatagcggttgttggtggatgtcagggtggagtcacacaaattttgcacaccctgcaaggtttgaaac |
2860776 |
T |
|
| Q |
116 |
acttgctatggaaccggagaagaaagaagagatcataaacgatcttattaaattcaagaaagggaaagagtattatgctaaagttggaaaggcttggaaa |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2860775 |
acttgctatggaaccggagaagaaagaagagatcataaacgatcttgttaaattcaagaaagggaaagagtattatgctaaagttggaaaggcttggaaa |
2860676 |
T |
|
| Q |
216 |
cggggttatctactctatggtccaccaggaactgggaaatctaccatgatatctgctattgcaaatttcatgaactacgatgtatatgatcttgaattaa |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| |
|
|
| T |
2860675 |
cggggttatctactctatggtccaccaggaactgggaaatctaccatgatatctgctattgcaaatttcatgaactacgacgtgtatgatcttgaattaa |
2860576 |
T |
|
| Q |
316 |
caactgtcaaggataacaatgagttgaaaacacttttgattgagacgtc |
364 |
Q |
| |
|
||||||||||||||||||||||||| |||| |||||||||||||||||| |
|
|
| T |
2860575 |
caactgtcaaggataacaatgagttaaaaagacttttgattgagacgtc |
2860527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 17 - 364
Target Start/End: Complemental strand, 2885444 - 2885096
Alignment:
| Q |
17 |
ttaagaataggcgactaaagctttacaccaacaatagcggttgttggtggatctcaggatggagtcacacaa-ttttgcgcaccctgcaaggtttgaaac |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| | |||||||||||||| || || ||||||||||||| |||||| |||||||||||||||||||| |
|
|
| T |
2885444 |
ttaagaataggcgactaaagctttacaccaacaatggtggttgttggtggatgtcggggtggagtcacacaaattttgcacaccctgcaaggtttgaaac |
2885345 |
T |
|
| Q |
116 |
acttgctatggaaccggagaagaaagaagagatcataaacgatcttattaaattcaagaaagggaaagagtattatgctaaagttggaaaggcttggaaa |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2885344 |
acttgctatggaaccggagaagaaagaagagatcataaacgatcttgttaaattcaagaaagggaaagagtattatgctaaagttggaaaggcttggaaa |
2885245 |
T |
|
| Q |
216 |
cggggttatctactctatggtccaccaggaactgggaaatctaccatgatatctgctattgcaaatttcatgaactacgatgtatatgatcttgaattaa |
315 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
2885244 |
cggggttatctactttatggtccaccaggaactgggaaatctaccatgatatcggctattgcaaatttcatgaactacgatgtatatgatctagaattaa |
2885145 |
T |
|
| Q |
316 |
caactgtcaaggataacaatgagttgaaaacacttttgattgagacgtc |
364 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2885144 |
ccactgtcaaggataacaatgagttgaaaacacttttgattgagacgtc |
2885096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 76 - 361
Target Start/End: Complemental strand, 2910231 - 2909945
Alignment:
| Q |
76 |
tggagtcacacaa-ttttgcgcaccctgcaaggtttgaaacacttgctatggaaccggagaagaaagaagagatcataaacgatcttattaaattcaaga |
174 |
Q |
| |
|
||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||| |
|
|
| T |
2910231 |
tggagtcacacaacttttgagcaccctgcaaggtttgaaacacttgctatggaaccggagaagaaggaagagatcataaacgatcttgttaaattcaaga |
2910132 |
T |
|
| Q |
175 |
aagggaaagagtattatgctaaagttggaaaggcttggaaacggggttatctactctatggtccaccaggaactgggaaatctaccatgatatctgctat |
274 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||| ||||||||| | ||||||||||||||||| || ||||||||||||||||||||||| |
|
|
| T |
2910131 |
aagggaaagagtattatgctaaagttggaaaggcgtggaaacgtggttatctagtttatggtccaccaggaaccggaaaatctaccatgatatctgctat |
2910032 |
T |
|
| Q |
275 |
tgcaaatttcatgaactacgatgtatatgatcttgaattaacaactgtcaaggataacaatgagttgaaaacacttttgattgagac |
361 |
Q |
| |
|
||| |||||||||||||| || || ||||||||| ||||||||| ||||||||||||| |||||||||||| ||||||||||||||| |
|
|
| T |
2910031 |
tgcgaatttcatgaactatgacgtttatgatcttcaattaacaattgtcaaggataactatgagttgaaaagacttttgattgagac |
2909945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 76 - 364
Target Start/End: Original strand, 2842113 - 2842402
Alignment:
| Q |
76 |
tggagtcacacaa-ttttgcgcaccctgcaaggtttgaaacacttgctatggaaccggagaagaaagaagagatcataaacgatcttattaaattcaaga |
174 |
Q |
| |
|
||||||||||||| ||||| |||||| ||||| ||||||||||||||| ||||||| | |||||||||||||| |||| |||||| |||||||||||| |
|
|
| T |
2842113 |
tggagtcacacaacttttgagcacccggcaagttttgaaacacttgctttggaaccaaaaaagaaagaagagattctaaatgatcttgttaaattcaaga |
2842212 |
T |
|
| Q |
175 |
aagggaaagagtattatgctaaagttggaaaggcttggaaacggggttatctactctatggtccaccaggaactgggaaatctaccatgatatctgctat |
274 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| | |||||| |||||||| || ||||||||||||||||| ||||| |
|
|
| T |
2842213 |
aagggaaagagtattatgctaaagttggaaaagcttggaaacgtggttatctactttttggtcctccaggaaccggtaaatctaccatgatatcggctat |
2842312 |
T |
|
| Q |
275 |
tgcaaatttcatgaactacgatgtatatgatcttgaattaacaactgtcaaggataacaatgagttgaaaacacttttgattgagacgtc |
364 |
Q |
| |
|
||| |||||||||||||| ||||| ||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
2842313 |
tgctaatttcatgaactatgatgtgtatgatcttgaattaacaattgtcaaggataacaatgagttgaaaagacttttgattgagacgtc |
2842402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 76 - 364
Target Start/End: Complemental strand, 2833507 - 2833218
Alignment:
| Q |
76 |
tggagtcacacaa-ttttgcgcaccctgcaaggtttgaaacacttgctatggaaccggagaagaaagaagagatcataaacgatcttattaaattcaaga |
174 |
Q |
| |
|
|||| |||||||| ||||| ||| |||||||| |||| ||| || ||||||||||| || |||||| ||||||| |||| |||||| |||| ||||||| |
|
|
| T |
2833507 |
tggaatcacacaacttttgagcatcctgcaagatttggaaccctagctatggaaccagaaaagaaacaagagattttaaatgatcttcttaagttcaaga |
2833408 |
T |
|
| Q |
175 |
aagggaaagagtattatgctaaagttggaaaggcttggaaacggggttatctactctatggtccaccaggaactgggaaatctaccatgatatctgctat |
274 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||| |||||||| |||||||| ||||| |
|
|
| T |
2833407 |
aaggtaaagagtattatgctaaagttggaaaggcttggaaacgtggttatctactttatggtcctccaggaactggaaaatctactatgatatcagctat |
2833308 |
T |
|
| Q |
275 |
tgcaaatttcatgaactacgatgtatatgatcttgaattaacaactgtcaaggataacaatgagttgaaaacacttttgattgagacgtc |
364 |
Q |
| |
|
||||||| ||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||| | |||||||||||| ||||| |
|
|
| T |
2833307 |
agcaaattacatgaactatgatgtgtatgatcttgaattaacaactgttaaggataacaatgagttgaagagacttttgattgaaacgtc |
2833218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 96 - 364
Target Start/End: Original strand, 14577872 - 14578140
Alignment:
| Q |
96 |
caccctgcaaggtttgaaacacttgctatggaaccggagaagaaagaagagatcataaacgatcttattaaattcaagaaagggaaagagtattatgcta |
195 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| | |||||||||||||||| ||| |||||||| |||| |||||| ||| |||||||| ||||||| |
|
|
| T |
14577872 |
caccctgcaaggttcgaaacacttgctatggatgcaaagaagaaagaagagataatagacgatcttgttaagttcaaggcaggtaaagagtactatgcta |
14577971 |
T |
|
| Q |
196 |
aagttggaaaggcttggaaacggggttatctactctatggtccaccaggaactgggaaatctaccatgatatctgctattgcaaatttcatgaactacga |
295 |
Q |
| |
|
|||||||||||||||||||||| |||||| |||| | ||||| |||||||| || ||||||||||||||||| |||||||||||||| ||||||||||| |
|
|
| T |
14577972 |
aagttggaaaggcttggaaacgcggttatttacttttcggtcctccaggaaccggaaaatctaccatgatatcggctattgcaaattttatgaactacga |
14578071 |
T |
|
| Q |
296 |
tgtatatgatcttgaattaacaactgtcaaggataacaatgagttgaaaacacttttgattgagacgtc |
364 |
Q |
| |
|
|| ||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| |||||| |
|
|
| T |
14578072 |
cgtttatgatcttgaattaacaactatcaaggataacaatgagttgaaaagacttttgattgcgacgtc |
14578140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 135 - 364
Target Start/End: Original strand, 2828815 - 2829044
Alignment:
| Q |
135 |
aagaaagaagagatcataaacgatcttattaaattcaagaaagggaaagagtattatgctaaagttggaaaggcttggaaacggggttatctactctatg |
234 |
Q |
| |
|
||||||||||| || ||||| |||||| |||| ||||| | ||| |||||||| ||| ||||||| || |||||||||||||| ||||||||||| | || |
|
|
| T |
2828815 |
aagaaagaagaaattataaatgatcttgttaagttcaaaacaggtaaagagtactatactaaagtcgggaaggcttggaaacgtggttatctactttttg |
2828914 |
T |
|
| Q |
235 |
gtccaccaggaactgggaaatctaccatgatatctgctattgcaaatttcatgaactacgatgtatatgatcttgaattaacaactgtcaaggataacaa |
334 |
Q |
| |
|
|||| || |||||||| |||||||| |||||||| |||||||| ||||||||||| || ||||| ||||||||||| ||||||||| ||||| ||||||| |
|
|
| T |
2828915 |
gtcctcctggaactggaaaatctacgatgatatcagctattgctaatttcatgaattatgatgtgtatgatcttgagttaacaactatcaagaataacaa |
2829014 |
T |
|
| Q |
335 |
tgagttgaaaacacttttgattgagacgtc |
364 |
Q |
| |
|
||||||||||| ||||||||| |||||||| |
|
|
| T |
2829015 |
tgagttgaaaagacttttgatcgagacgtc |
2829044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 186 - 316
Target Start/End: Original strand, 1800792 - 1800922
Alignment:
| Q |
186 |
tattatgctaaagttggaaaggcttggaaacggggttatctactctatggtccaccaggaactgggaaatctaccatgatatctgctattgcaaatttca |
285 |
Q |
| |
|
|||||||| ||| | || |||||||||||||| |||||| |||| |||||||| |||||||| || |||||||| |||||| | ||||| || ||||||| |
|
|
| T |
1800792 |
tattatgcaaaaatcggtaaggcttggaaacgcggttatttactttatggtcctccaggaacaggtaaatctactatgatagccgctatggcgaatttca |
1800891 |
T |
|
| Q |
286 |
tgaactacgatgtatatgatcttgaattaac |
316 |
Q |
| |
|
||||||| ||||| ||||||||||||||||| |
|
|
| T |
1800892 |
tgaactatgatgtttatgatcttgaattaac |
1800922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 206 - 283
Target Start/End: Original strand, 53395497 - 53395574
Alignment:
| Q |
206 |
ggcttggaaacggggttatctactctatggtccaccaggaactgggaaatctaccatgatatctgctattgcaaattt |
283 |
Q |
| |
|
|||||||||| | |||||||| || |||||||| ||||||||||| ||||||| |||||| ||||||| || ||||| |
|
|
| T |
53395497 |
ggcttggaaaagaggttatcttctttatggtcctccaggaactggaaaatctagcatgattgctgctatggctaattt |
53395574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 195 - 258
Target Start/End: Original strand, 8043817 - 8043880
Alignment:
| Q |
195 |
aaagttggaaaggcttggaaacggggttatctactctatggtccaccaggaactgggaaatcta |
258 |
Q |
| |
|
|||||||| | |||||||||||| |||||| | | |||||||| ||||||||||||||||||| |
|
|
| T |
8043817 |
aaagttggtagggcttggaaacgtggttatttgttgtatggtcctccaggaactgggaaatcta |
8043880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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