View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20042_low_16 (Length: 361)
Name: NF20042_low_16
Description: NF20042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20042_low_16 |
 |  |
|
Alignment Details
Target: chr2 (Bit Score: 291; Significance: 1e-163; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 16 - 346
Target Start/End: Original strand, 24479833 - 24480163
Alignment:
| Q |
16 |
atccaataatcactaaaaaattgagatataaagatgtagtagaatttagctttactaaagatgaagcaagcaacttaatcatattgatttatatgttgct |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24479833 |
atccaataatcactaaaaaattgagatataaagatgtagtagaatttagcttaactaaagatgaagcaagcaacttaatcatattgatttatatgttgct |
24479932 |
T |
 |
| Q |
116 |
actttctaaatagaggaatgatctgatattgttgtagaagtaaaatcaatcctaccaaaccctaagcacaaaaaacagtagaatcacaataaccacccaa |
215 |
Q |
| |
|
||||||| |||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
24479933 |
actttctgaatagaggaaggatctgatattgttgtacaagtaaaatcaatcctaccaaaccctaagcacaaaaaacagtagaatcacaataaccacacaa |
24480032 |
T |
 |
| Q |
216 |
cataacatacaagctactcaaatagtgatgaaatatagaaaccaacggaaaagaaaagcatgatcgaatcaaacaatagtttaatgttttttctctatca |
315 |
Q |
| |
|
|||||||||||||||||| |||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
24480033 |
cataacatacaagctacttaaatagtgatcaaatatagaaaccaacggaaaataaaagcatgatcgaatcaaacaatagttttatgttttttctctatca |
24480132 |
T |
 |
| Q |
316 |
ttttataacatccaaatcctgggaattcttt |
346 |
Q |
| |
|
|||||||||||||||||| |||||||||||| |
|
|
| T |
24480133 |
ttttataacatccaaatcatgggaattcttt |
24480163 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 16 - 290
Target Start/End: Original strand, 7703120 - 7703416
Alignment:
| Q |
16 |
atccaataatcactaaaaaattgagatataaagatgtagtagaatttagctttactaaagatgaagcaagcaacttaatcatattgatttatatgttgct |
115 |
Q |
| |
|
|||||| |||||||| |||||||||||||||| ||| || |||||||| |||||||||||||||||||||||| |||| |||||||||| ||||| || |
|
|
| T |
7703120 |
atccaacaatcactagaaaattgagatataaaaatggagcagaatttacctttactaaagatgaagcaagcaa---aatcctattgatttaaatgtttct |
7703216 |
T |
 |
| Q |
116 |
actttctaaataga--------ggaatga-----tctgatattgttgta------ga-agtaaaatcaatcctaccaaaccctaagcacaaaaaacag-- |
193 |
Q |
| |
|
||||||| || ||| |||| || |||||||||||| || || ||||||| ||||||||||| | ||||||||||||||||| |
|
|
| T |
7703217 |
actttctgaagagaagaagagaggaaggacttcctctgatattgttatatttcctgagagtaaaaccaatcctaccatatcctaagcacaaaaaacatca |
7703316 |
T |
 |
| Q |
194 |
--tagaatcacaataaccacccaacataacatacaagctactcaaatagtgatgaaatatagaaaccaa-cggaaaagaaaagcatgatcgaatcaaaca |
290 |
Q |
| |
|
|||| ||||||| ||||| ||||| |||||||||||||||||||||||||| ||||||||||||||| || ||| ||||||||||||| ||||||||| |
|
|
| T |
7703317 |
tatagattcacaattaccacgcaacagaacatacaagctactcaaatagtgataaaatatagaaaccaatcgaaaaggaaaagcatgatcaaatcaaaca |
7703416 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 154 - 290
Target Start/End: Complemental strand, 27150515 - 27150374
Alignment:
| Q |
154 |
agtaaaatcaatcctaccaaaccctaagcacaaaaaacag----tagaatcacaataaccacccaacataacatacaagctactcaaatagtgatgaaat |
249 |
Q |
| |
|
||||||| ||||||||||| | ||||||||||||||||| |||| ||||||| ||||| ||||| |||||||||||||||||||||||||| |||| |
|
|
| T |
27150515 |
agtaaaaccaatcctaccatatcctaagcacaaaaaacatcatatagattcacaattaccacacaacagaacatacaagctactcaaatagtgatcaaat |
27150416 |
T |
 |
| Q |
250 |
atagaaaccaa-cggaaaagaaaagcatgatcgaatcaaaca |
290 |
Q |
| |
|
||||||||||| || ||| |||||||||||| ||||||||| |
|
|
| T |
27150415 |
atagaaaccaatcgaaaaggaaaagcatgataaaatcaaaca |
27150374 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 16 - 133
Target Start/End: Complemental strand, 27150672 - 27150555
Alignment:
| Q |
16 |
atccaataatcactaaaaaattgagatataaagatgtagtagaatttagctttactaaagatgaagcaagcaacttaatcatattgatttatatgttgct |
115 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||| || | |||||| |||||||||||||||| |||||||| |||| |||||||||| ||||| | |
|
|
| T |
27150672 |
atccaacaatcactaaaaaattgagatataaagatggagcaaaatttacctttactaaagatgaaccaagcaacaaaatcctattgatttaagtgttgtt |
27150573 |
T |
 |
| Q |
116 |
actttctaaatagaggaa |
133 |
Q |
| |
|
| ||||| || ||||||| |
|
|
| T |
27150572 |
aatttctgaacagaggaa |
27150555 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 105; Significance: 2e-52; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 16 - 244
Target Start/End: Original strand, 6224007 - 6224246
Alignment:
| Q |
16 |
atccaataatcactaaaaaattgagatataaagatgtagtagaatttagctttactaaagatgaagcaagcaacttaatcatattgatttatatgttgct |
115 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||||||| ||||||||||||||| ||||||| |
|
|
| T |
6224007 |
atccaacaatcactaaaaaattgagatataaagatggagcagaatttacctttactaaagatgaagcaagcaacaaaatcatattgatttaagtgttgct |
6224106 |
T |
 |
| Q |
116 |
actttctaaatagaggaatgatctgatattgttgta-------gaagtaaaatcaatcctaccaaaccctaagcac----aaaaaacagtagaatcacaa |
204 |
Q |
| |
|
||||| | || ||||||| |||| | |||||| || |||||||| ||||||||||| ||||||||||| ||||||| ||||||||||| |
|
|
| T |
6224107 |
actttttgaacagaggaaagatcccacattgttatattccatgaaagtaaaaccaatcctaccagaccctaagcacaaaaaaaaaacgctagaatcacaa |
6224206 |
T |
 |
| Q |
205 |
taaccacccaacataacatacaagctactcaaatagtgat |
244 |
Q |
| |
|
||||||| |||||||||||||||||||| ||||||||||| |
|
|
| T |
6224207 |
taaccacacaacataacatacaagctacccaaatagtgat |
6224246 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 87; Significance: 1e-41; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 16 - 290
Target Start/End: Complemental strand, 37744506 - 37744223
Alignment:
| Q |
16 |
atccaataatcactaaaaaa-ttgagatataaagatgtagtagaatttagctttactaaagatgaagcaagcaacttaatcatattgatttatatgttgc |
114 |
Q |
| |
|
|||||| ||||||||||||| |||||||| ||||||| | |||||||| ||||||||||||||||||||| ||| |||| ||||||||| |||||| |
|
|
| T |
37744506 |
atccaacaatcactaaaaaaattgagatacaaagatggtgcagaatttacctttactaaagatgaagcaagaaacaaaatccaattgatttaagtgttgc |
37744407 |
T |
 |
| Q |
115 |
tactttctaaatagaggaatgatctgatattgttgtag-------aagtaaaatcaatcctaccaaaccctaagcacaaaaaacag-tagaatcacaata |
206 |
Q |
| |
|
|||||||| || ||||||| ||||| | |||||| || |||||||||||||||||||| ||| |||| ||||||||| ||||||||||||| |
|
|
| T |
37744406 |
tactttctgaagagaggaaggatctcacattgttatattccatgaaagtaaaatcaatcctaccaggccccaagcg-aaaaaacagctagaatcacaata |
37744308 |
T |
 |
| Q |
207 |
accacccaacataacatacaagctactcaaatagtgatgaaatatagaaaccaacggaaaa-gaaaagcatgatcgaatcaaaca |
290 |
Q |
| |
|
||||| ||||| | |||||||||||| ||||| |||| |||||||||||||| | |||| ||||||||||||| ||||||||| |
|
|
| T |
37744307 |
accacacaacagaccatacaagctacacaaattatgatcaaatatagaaaccagctaaaaaggaaaagcatgatcaaatcaaaca |
37744223 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 16 - 136
Target Start/End: Complemental strand, 24558457 - 24558335
Alignment:
| Q |
16 |
atccaataatcactaaaaaattgagatataaagatgtag--tagaatttagctttactaaagatgaagcaagcaacttaatcatattgatttatatgttg |
113 |
Q |
| |
|
||||||| ||| |||||| ||||||||||||||||| || || |||||| ||||||||||| ||||||||||||| |||| |||| ||||| ||||| |
|
|
| T |
24558457 |
atccaatgatctctaaaacattgagatataaagatggagcatataatttacctttactaaaggtgaagcaagcaacaaaatcctattaatttaagtgttg |
24558358 |
T |
 |
| Q |
114 |
ctactttctaaatagaggaatga |
136 |
Q |
| |
|
||||||||| |||||||| |||| |
|
|
| T |
24558357 |
ctactttctgaatagaggcatga |
24558335 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 16 - 95
Target Start/End: Complemental strand, 37750414 - 37750335
Alignment:
| Q |
16 |
atccaataatcactaaaaaattgagatataaagatgtagtagaatttagctttactaaagatgaagcaagcaacttaatc |
95 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||| || |||||||| ||||| ||||||||||||||| |||| |||| |
|
|
| T |
37750414 |
atccaacaatcactaaaaaattgagatataaagatggagcagaatttacctttagtaaagatgaagcaagtaactaaatc |
37750335 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 156 - 261
Target Start/End: Original strand, 21318656 - 21318761
Alignment:
| Q |
156 |
taaaatcaatcctaccaaaccctaagcacaaaaaacag-tagaatcacaataaccacccaacataacatacaagctactcaaatagtgatgaaatataga |
254 |
Q |
| |
|
||||| ||||||||||||| |||||| |||||| ||| ||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||||| | |
|
|
| T |
21318656 |
taaaaccaatcctaccaaatcctaagtacaaaag-cagctagaatcacaataaccatacaacagaacatacaagctactcaaatagtgatcaaatataaa |
21318754 |
T |
 |
| Q |
255 |
aaccaac |
261 |
Q |
| |
|
|| |||| |
|
|
| T |
21318755 |
aatcaac |
21318761 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 79; Significance: 7e-37; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 16 - 208
Target Start/End: Complemental strand, 25338567 - 25338367
Alignment:
| Q |
16 |
atccaataatcactaaaaaattgagatataaagatgtagtagaatttagctttactaaagatgaagcaagcaacttaatcatattgatttatatgttgct |
115 |
Q |
| |
|
||||||||||||| ||||| |||||||||||||||| ||||||||||| ||||||||||||||||||||||||| |||| |||||||||| ||||||| |
|
|
| T |
25338567 |
atccaataatcacaaaaaatttgagatataaagatggagtagaatttacctttactaaagatgaagcaagcaacaaaatcctattgatttaagtgttgct |
25338468 |
T |
 |
| Q |
116 |
actttctaaatagaggaatgatctgatattgttgta-------gaagtaaaatcaatcctaccaaaccctaagcacaaaaaacag-tagaatcacaataa |
207 |
Q |
| |
|
|||||||||| ||||||| ||| |||||||| || |||||||| ||| |||||| ||| |||||||||||||||| | |||||||||||| |
|
|
| T |
25338467 |
actttctaaacagaggaaagattcaatattgttatattccatgaaagtaaaacgaattctaccagaccgtaagcacaaaaaacagcttgaatcacaataa |
25338368 |
T |
 |
| Q |
208 |
c |
208 |
Q |
| |
|
| |
|
|
| T |
25338367 |
c |
25338367 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 16 - 139
Target Start/End: Original strand, 31571559 - 31571682
Alignment:
| Q |
16 |
atccaataatcactaaaaaattgagatataaagatgtagtagaatttagctttactaaagatgaagcaagcaacttaatcatattgatttatatgttgct |
115 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||| || |||| ||| |||||||||||||||| ||| |||| |||| |||||||||| |||||| |
|
|
| T |
31571559 |
atccaacaatcactaaaaaattgagatataaagatgcagaagaacttacctttactaaagatgaatcaaacaacaaaatcctattgatttaagtgttgcc |
31571658 |
T |
 |
| Q |
116 |
actttctaaatagaggaatgatct |
139 |
Q |
| |
|
||||||| || ||||||| ||||| |
|
|
| T |
31571659 |
actttctgaacagaggaaggatct |
31571682 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 59; Significance: 6e-25; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 23 - 145
Target Start/End: Complemental strand, 24631666 - 24631544
Alignment:
| Q |
23 |
aatcactaaaaaattgagatataaagatgtagtagaatttagctttactaaagatgaagcaagcaacttaatcatattgatttatatgttgctactttct |
122 |
Q |
| |
|
|||||||||||| ||||||||||||||| || |||||||| ||||||||||||||||||||| ||| |||| |||||||| | |||||| ||||||| |
|
|
| T |
24631666 |
aatcactaaaaatctgagatataaagatggagcagaatttacctttactaaagatgaagcaaggaacaaaatcctattgattcaagtgttgcaactttct |
24631567 |
T |
 |
| Q |
123 |
aaatagaggaatgatctgatatt |
145 |
Q |
| |
|
|| ||||||| ||||||||||| |
|
|
| T |
24631566 |
gaaaagaggaaggatctgatatt |
24631544 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 143
Target Start/End: Original strand, 1943272 - 1943380
Alignment:
| Q |
30 |
aaaaaattgagatataaagatgtagtagaatttagctttactaaagatgaagcaagcaacttaatcatattgatttatatgttgctactttctaaataga |
129 |
Q |
| |
|
|||||||||||||||||||||| || |||||||| |||| |||| || |||||||| || |||||||||| |||| |||||||||||| ||| |
|
|
| T |
1943272 |
aaaaaattgagatataaagatggagcagaatttaccttttctaa-----aaacaagcaacaaaagtctattgatttaagtgttactactttctaaacaga |
1943366 |
T |
 |
| Q |
130 |
ggaatgatctgata |
143 |
Q |
| |
|
| || ||||||||| |
|
|
| T |
1943367 |
gtaaggatctgata |
1943380 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 57; Significance: 1e-23; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 16 - 148
Target Start/End: Complemental strand, 26607997 - 26607865
Alignment:
| Q |
16 |
atccaataatcactaaaaaattgagatataaagatgtagtagaatttagctttactaaagatgaagcaagcaacttaatcatattgatttatatgttgct |
115 |
Q |
| |
|
|||||| ||||| ||||||| |||||||||||||| || |||||||| || |||||||||||||||||||||| |||| |||||||||| ||||||| |
|
|
| T |
26607997 |
atccaacaatcaataaaaaaatgagatataaagatagagcagaatttacctctactaaagatgaagcaagcaacaaaatcctattgatttaagtgttgct |
26607898 |
T |
 |
| Q |
116 |
actttctaaatagaggaatgatctgatattgtt |
148 |
Q |
| |
|
|||| | || ||||||| ||||||| |||||| |
|
|
| T |
26607897 |
acttccagaacagaggaaggatctgacattgtt |
26607865 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 16 - 148
Target Start/End: Complemental strand, 26618563 - 26618431
Alignment:
| Q |
16 |
atccaataatcactaaaaaattgagatataaagatgtagtagaatttagctttactaaagatgaagcaagcaacttaatcatattgatttatatgttgct |
115 |
Q |
| |
|
|||||| | |||||||||||||||||||||||||| || | || ||| || | ||| |||||||||||||||| |||| |||||||||| ||||||| |
|
|
| T |
26618563 |
atccaacattcactaaaaaattgagatataaagatagagcataacttacctctgctagagatgaagcaagcaacaaaatcctattgatttaagtgttgct |
26618464 |
T |
 |
| Q |
116 |
actttctaaatagaggaatgatctgatattgtt |
148 |
Q |
| |
|
||||||| || ||||||| ||||||| |||||| |
|
|
| T |
26618463 |
actttctgaacagaggaaggatctgacattgtt |
26618431 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 211
Target Start/End: Complemental strand, 26620522 - 26620335
Alignment:
| Q |
30 |
aaaaaattgagatataaagatgtagtagaatttagctttactaaagat-gaagcaagcaacttaatcatattgatttatatgttgctactttctaaatag |
128 |
Q |
| |
|
|||||||||| ||||||||| || | |||||| || |||||||||| ||| |||||||| |||| |||||||||| |||||||||||| | || || |
|
|
| T |
26620522 |
aaaaaattgatttataaagataaagcataatttacctctactaaagattgaaacaagcaacaaaatcctattgatttaagtgttgctactttatgaacag |
26620423 |
T |
 |
| Q |
129 |
aggaatgatctgatattgttgta-------gaagtaaaatcaatcctaccaaaccctaagcacaaaaaacag-tagaatcacaataaccac |
211 |
Q |
| |
|
||||| ||||||| ||| || || |||||||| |||||||| || ||||||||||||| |||| |||||||||||||||||| |
|
|
| T |
26620422 |
aggaaggatctgacatttttatattccatgaaagtaaaaccaatcctagca---cctaagcacaaaagacagctagaatcacaataaccac |
26620335 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 156 - 290
Target Start/End: Complemental strand, 39367399 - 39367258
Alignment:
| Q |
156 |
taaaatcaatcctaccaaaccctaagcacaaaaaacag------tagaatcacaataaccacccaacataacatacaagctactcaaatagtgatgaaat |
249 |
Q |
| |
|
||||||||||||||||| | |||||||| |||||| | |||| ||||||| ||||| ||||||||||||||||||||||||||||||| |||| |
|
|
| T |
39367399 |
taaaatcaatcctaccatatcctaagcaaaaaaaaaaaatcatatagattcacaattaccacacaacataacatacaagctactcaaatagtgaacaaat |
39367300 |
T |
 |
| Q |
250 |
atagaaaccaa-cggaaaagaaaagcatgatcgaatcaaaca |
290 |
Q |
| |
|
||||||||||| | ||| ||||||||||||| ||||||||| |
|
|
| T |
39367299 |
atagaaaccaatcaaaaaggaaaagcatgatcaaatcaaaca |
39367258 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 16 - 103
Target Start/End: Original strand, 18308874 - 18308961
Alignment:
| Q |
16 |
atccaataatcactaaaaaattgagatataaagatgtagtagaatttagctttactaaagatgaagcaagcaacttaatcatattgat |
103 |
Q |
| |
|
|||||| ||||||||| ||||||||||||||||||| || |||||||| |||||||| |||||||||||||| | |||||||||||| |
|
|
| T |
18308874 |
atccaacaatcactaagaaattgagatataaagatggagcagaatttacctttactagagatgaagcaagcagcaaaatcatattgat |
18308961 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 134
Target Start/End: Complemental strand, 39367559 - 39367442
Alignment:
| Q |
16 |
atccaataatcactaaaaaattgagatataaagatgtagtagaatttagctttactaaagatgaagcaagcaacttaatcatattgatttatatgttgct |
115 |
Q |
| |
|
|||||| ||||||| ||| | |||||||||| |||| || ||||||| ||||||||||||||||||| |||| |||| |||||||||| ||||||| |
|
|
| T |
39367559 |
atccaacaatcactgaaataatgagatataa-gatggagcagaattttcctttactaaagatgaagcagccaacaaaatcctattgatttaagtgttgct |
39367461 |
T |
 |
| Q |
116 |
actttctaaatagaggaat |
134 |
Q |
| |
|
||||||| || |||||||| |
|
|
| T |
39367460 |
actttctgaacagaggaat |
39367442 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 153 - 290
Target Start/End: Original strand, 12190539 - 12190679
Alignment:
| Q |
153 |
aagtaaaatcaatcctaccaaaccctaagcacaaaaaa----cag-tagaatcacaataaccacccaacataacatacaagctactcaaatagtgatgaa |
247 |
Q |
| |
|
|||||||| ||||||||||| | ||||||||||||||| || ||| ||||||| ||||| ||| | ||||||| | ||||||||| || || || |
|
|
| T |
12190539 |
aagtaaaaccaatcctaccatatcctaagcacaaaaaaataacatataggttcacaattaccacacaatagaacatacga--tactcaaattgtaatcaa |
12190636 |
T |
 |
| Q |
248 |
atatagaaaccaacggaaaagaaaagcatgatcgaatcaaaca |
290 |
Q |
| |
|
|||||||||||| ||||| |||||||||||| ||||||||| |
|
|
| T |
12190637 |
gtatagaaaccaatcgaaaacaaaagcatgatcaaatcaaaca |
12190679 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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