View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20042_low_18 (Length: 345)
Name: NF20042_low_18
Description: NF20042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20042_low_18 |
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| [»] scaffold0027 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 16 - 327
Target Start/End: Complemental strand, 12123665 - 12123354
Alignment:
| Q |
16 |
tttgcaatgaaactaggaataccagcttcttaaaatcactttgaacttgcataaggacgcaagaatatatcaccaaacgccaatccaaacaagcctttag |
115 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| |||| |
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| T |
12123665 |
tttgcagtgaaactaggaataccagcttcttaaaatcactttgaacttgcataaggacgcaagaatatatcaccagacaccaatccaaacaagccattag |
12123566 |
T |
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| Q |
116 |
ttgtgctaaatgggtaggaagtatcttcatgtattgctaattctacnnnnnnngcttatatattttgttgttgctagcaattgttctagacacactcaag |
215 |
Q |
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| T |
12123565 |
ttgtgctaaatgggtaggaagtatcttcatgtattgctaattctactttttttgcttatatattttgttggtcctagcaattgtgctagacacactcaag |
12123466 |
T |
|
| Q |
216 |
ctttttatgtgaaggctaagtctcaaggtttacatcaaagtttcttagactcaaagccaaaagcaatgtcaaggccaccttcaggtccttcaagggagca |
315 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12123465 |
ctttatatgtgaaggctaagtctcaaggtttacatcaaagtttcttagactcaaagccaaaagcaatgtcaaggccaccttcaggtccttcaagggagca |
12123366 |
T |
|
| Q |
316 |
taatggtattga |
327 |
Q |
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|||||||||||| |
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| T |
12123365 |
taatggtattga |
12123354 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 45 - 106
Target Start/End: Original strand, 29430698 - 29430759
Alignment:
| Q |
45 |
ttaaaatcactttgaacttgcataaggacgcaagaatatatcaccaaacgccaatccaaaca |
106 |
Q |
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| T |
29430698 |
ttaaattcacgttgaacttgcatagggacacaagaatatatcgcgaaacgccaatccaaaca |
29430759 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 15 - 112
Target Start/End: Complemental strand, 12788756 - 12788658
Alignment:
| Q |
15 |
gtttgcaatgaaactaggaataccagcttcttaaaatcactttgaac-ttgcataaggacgcaagaatatatcaccaaacgccaatccaaacaagcctt |
112 |
Q |
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| T |
12788756 |
gtttgcagtgaagctaggaataccagcttcttaaaatcacgttgaactttgcatagggacgtgagaatatatcacctaacgccgatcgaaacaagcctt |
12788658 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 15 - 108
Target Start/End: Original strand, 34344830 - 34344922
Alignment:
| Q |
15 |
gtttgcaatgaaactaggaataccagcttcttaaaatcactttgaacttgcataaggacgcaagaatatatcaccaaacgccaatccaaacaag |
108 |
Q |
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| T |
34344830 |
gtttgcagtgaagttaggaataccagctttttaaaatcacgttgaatttgcataaagacacgag-atatatcacctaaccctaatctaaacaag |
34344922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 15 - 110
Target Start/End: Complemental strand, 3293973 - 3293874
Alignment:
| Q |
15 |
gtttgcaatgaaactaggaataccagcttcttaaaa-tcactttgaacttgcataaggacgcaagaatatat---caccaaacgccaatccaaacaagcc |
110 |
Q |
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| T |
3293973 |
gtttgcagtgaaaataggaatactattttcttaaaaatcatgttgaacttgcatagggacgccggaatatattatcaccaaatgccaatccaaacaagcc |
3293874 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 107
Target Start/End: Original strand, 37638296 - 37638376
Alignment:
| Q |
28 |
ctaggaataccagcttcttaaaatcactttgaactt-gcataaggacgcaagaatatatcaccaaacgccaatccaaacaa |
107 |
Q |
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| T |
37638296 |
ctaggaataccaacttcttaaaatctcattgaattttgcatagggacactagaatatatcacctaacacaaatccaaacaa |
37638376 |
T |
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Target: scaffold0027 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0027
Description:
Target: scaffold0027; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 106
Target Start/End: Complemental strand, 20826 - 20780
Alignment:
| Q |
60 |
acttgcataaggacgcaagaatatatcaccaaacgccaatccaaaca |
106 |
Q |
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| T |
20826 |
acttgcatatggacgcgaggatatatgaccaaacgccaatccaaaca |
20780 |
T |
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