View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20042_low_19 (Length: 335)
Name: NF20042_low_19
Description: NF20042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20042_low_19 |
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Alignment Details
Target: chr8 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 5 - 329
Target Start/End: Original strand, 45344288 - 45344607
Alignment:
| Q |
5 |
cattgttgtgactgaggaaataaatatccttgattgatgaaaatgaaggctttgtactaaagtaaattttttagtattctacaagataaaattgttatat |
104 |
Q |
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| T |
45344288 |
cattgttgtgactgatgaaataaatatccttgtttgatgaaaatgaaggctttgtactaaagtaatttttttagtattctacaagataaaattgttatat |
45344387 |
T |
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| Q |
105 |
aaaattaacaattacatgtttagttgtataaattggatgcaacagttttcatttctttttaagttataaaatttatctcttctgcacttgtgagaaagat |
204 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
45344388 |
aaaattaacaattacatgtttagttgtataaattggatgcaacagttttcatttctttttaagttataaaatttatctcttctgctcttgtgagaaagat |
45344487 |
T |
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| Q |
205 |
aagatcagaattgaaaaaagaaatagatttatcgacattcatgggtggatgctatgtaaaatattccttcatacaaagttccacaaaaatagtccagatt |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
45344488 |
aagatcagaattgaaaaaagaaatagatttatcgacattcatgggtggatgctatg-----tattccttcatacaaagttccacaaaaatagtccagatt |
45344582 |
T |
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| Q |
305 |
caagctattgtatattcccaaacat |
329 |
Q |
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||||||||||||||||||||||||| |
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| T |
45344583 |
caagctattgtatattcccaaacat |
45344607 |
T |
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