View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20042_low_20 (Length: 326)
Name: NF20042_low_20
Description: NF20042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20042_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 33 - 319
Target Start/End: Original strand, 2509800 - 2510077
Alignment:
| Q |
33 |
agcatagggcataattccatcaaaatctgtgtttataaacaaacgaataattcttgattatttgatatgcctggtttagattaaaagctagaattatctg |
132 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
2509800 |
agcatagggcataattccatcaaaatctgtgtttataaacaaacgaataattcttgattatttgatatgcctggtttaaattaaaagctagaattatctg |
2509899 |
T |
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| Q |
133 |
acctatataaactttgaaactgttttttaagtggtaatccaattaccttaataattgcttttaagagattgatttctcctaaagggatgttctttcattc |
232 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| |||||||||||||||||||||||| |
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| T |
2509900 |
acctatataaactttgaaactgttttttaagtggtaatccaattaccttaataattgctaccaaaagattgatttgtcctaaagggatgttctttcattc |
2509999 |
T |
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| Q |
233 |
nnnnnnnnnnnnnctaggtccatataatattaaactgtttatcaatatgcttctttgagagactcaattatactcgaaggttgatct |
319 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
2510000 |
gtatatatatatactaggtccat---------aactgtttatcaatatgcttctttgagagactcagttatactcgaaggttgatct |
2510077 |
T |
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