View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20042_low_26 (Length: 252)
Name: NF20042_low_26
Description: NF20042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20042_low_26 |
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Alignment Details
Target: chr7 (Bit Score: 173; Significance: 4e-93; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 14 - 210
Target Start/End: Original strand, 47122216 - 47122415
Alignment:
| Q |
14 |
agagaggtttgtcgactttttcttttactaacaataaccttttctctatgcattcatcattatatcact-tacttatag--gaccgtattaggtttatat |
110 |
Q |
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| T |
47122216 |
agagaggtttgtcgactttttcttttactaacaattaccttttctctatgcattcatcattatatcactatacttatagaggaccgtattaggtttatat |
47122315 |
T |
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| Q |
111 |
tcctagtagttgtgtgcctattactcgtgtatcattttatcaaagatatcattatagtcattaccatgttggtttgatctctacttttacataatttggt |
210 |
Q |
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| T |
47122316 |
tcctagtagttgtgtgcctattacttgtgtatcattttatcaaagatatcattatagtcattaccatgttggtttgatctctacttttacataatttggt |
47122415 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 210 - 252
Target Start/End: Original strand, 47122432 - 47122475
Alignment:
| Q |
210 |
ttaaattagttttgggttc-tacaaatatagtgaattttgtttt |
252 |
Q |
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| T |
47122432 |
ttaaattagttttgggttcctacaaatatagtgaattttgtttt |
47122475 |
T |
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