View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20042_low_28 (Length: 245)
Name: NF20042_low_28
Description: NF20042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20042_low_28 |
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Alignment Details
Target: chr3 (Bit Score: 190; Significance: 1e-103; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 37483662 - 37483890
Alignment:
| Q |
1 |
tctgattttggttatgtacgaacccaagcaagcttggacaaacttctgggtgtagtgaattaaatgtggtgtttatgtagatggtatatttgctagaaaa |
100 |
Q |
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| T |
37483662 |
tctgattttggttatgtacaaacccaagcaagcccggacaaacttctgggtgtagtgaattaaatgtggtgtttatgtagatagtatatttgctagaaaa |
37483761 |
T |
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| Q |
101 |
tttgggattttaacatcgcatgtcatgttatttcagaccaacgaatgtcactaacactaatgttttgtcatttatctttataatcagatgacatttccca |
200 |
Q |
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| T |
37483762 |
tttgggattttaacgtcgcatgtcatgttatttcacaccaacgaatgtcactaacactaatg-tttgtcatttatctttataatcggatgacatttccca |
37483860 |
T |
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| Q |
201 |
acgcttgatatgaatatatgcaagtcttga |
230 |
Q |
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| T |
37483861 |
acgcttgatatgaatatatgtaagtcttga |
37483890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 37474987 - 37475215
Alignment:
| Q |
1 |
tctgattttggttatgtacgaacccaagcaagcttggacaaacttctgggtgtagtgaattaaatgtggtgtttatgtagatggtatatttgctagaaaa |
100 |
Q |
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| T |
37474987 |
tctgattttggttatgtacaaacccaagctagcccggacaaacttctgggtgtagtgaattaaacgtggtgtttatgtagatagtatatttgctagaaaa |
37475086 |
T |
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| Q |
101 |
tttgggattttaacatcgcatgtcatgttatttcagaccaacgaatgtcactaacactaatgttttgtcatttatctttataatcagatgacatttccca |
200 |
Q |
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| T |
37475087 |
tttgggattttaacgtcgcatgtcatgttatttcacaccaacgaatgtcactaacactaatg-tttgtcatttatctttataatcggatgacatttccca |
37475185 |
T |
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| Q |
201 |
acgcttgatatgaatatatgcaagtcttga |
230 |
Q |
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| T |
37475186 |
acgcttgatatgaatatatgcaagtcttga |
37475215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 164 - 217
Target Start/End: Original strand, 37469812 - 37469865
Alignment:
| Q |
164 |
tttgtcatttatctttataatcagatgacatttcccaacgcttgatatgaatat |
217 |
Q |
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| T |
37469812 |
tttgtcatttacctatataatcggatgatatttcccaacgtttgatatgaatat |
37469865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 98
Target Start/End: Original strand, 37160880 - 37160920
Alignment:
| Q |
58 |
aattaaatgtggtgtttatgtagatggtatatttgctagaa |
98 |
Q |
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| T |
37160880 |
aattaaatatgatgtttatgtaggtggtatatttgctagaa |
37160920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 98
Target Start/End: Original strand, 37205427 - 37205467
Alignment:
| Q |
58 |
aattaaatgtggtgtttatgtagatggtatatttgctagaa |
98 |
Q |
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| T |
37205427 |
aattaaatatgatgtttatgtaggtggtatatttgctagaa |
37205467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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