View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20042_low_3 (Length: 619)
Name: NF20042_low_3
Description: NF20042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20042_low_3 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 398; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 194 - 603
Target Start/End: Complemental strand, 3909247 - 3908838
Alignment:
| Q |
194 |
ttaattgaagtggtgctgatagtactccataaagattgatcagaggctctgttgttaccactattgatgaagttttgaggccaattttcattataagcag |
293 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
3909247 |
ttaattgaagtggtgctgatagtactccataaagattgatcagaggctctgttgttaccactattgatgaagctttgaggccaattttcattataagcag |
3909148 |
T |
|
| Q |
294 |
tagaaacagtagcaacagaagtagtagcattaaccatgctagatggaggaatcaaattcaaacctcgtggctgagaggtaaacattggtcctgatccatt |
393 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
3909147 |
tagaaacagtagcaacagaagtagtagcattaaccatggtagatggaggaatcaaattcaaacctcgtggttgagaggtaaacattggtcctgatccatt |
3909048 |
T |
|
| Q |
394 |
accacctagttgaaagaattgttgcggaggtggacgattttgtccttgtgatgagcttacaagagcagcagcagcaacattgaaaccttgtaaaaggctc |
493 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3909047 |
accacctagttgaaagaattgttgcggaggtggacgattttgtccttgtgatgagcttacaagagcagcagcagcaacattgaaaccttgtaaaaggctc |
3908948 |
T |
|
| Q |
494 |
aaatttgaagaagaaccaagaccaagaccaactccaacaccaagattctgagactgttcaaaagtgtgtgatgcagagtgtgctgatggatttgaattta |
593 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3908947 |
aaatttgaagaagaaccaagaccaagaccaactccaacaccaagattctgagactgttcaaaagtgtgtgatgcagagtgtgctgatggatttgaattta |
3908848 |
T |
|
| Q |
594 |
aagaatgatt |
603 |
Q |
| |
|
|||||||||| |
|
|
| T |
3908847 |
aagaatgatt |
3908838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 18 - 104
Target Start/End: Complemental strand, 3909414 - 3909328
Alignment:
| Q |
18 |
gaggaggattgaactctgacagatcatgccattgatttagagccaaagaagcagatcaactagacacagcaccaacaataccattac |
104 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | ||||||||||| ||||||||| |
|
|
| T |
3909414 |
gaggaggattgaactctgacagatcatgccattgatttagagccaaagaagcagatccactagccccagcaccaacactaccattac |
3909328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University