View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20042_low_31 (Length: 227)
Name: NF20042_low_31
Description: NF20042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20042_low_31 |
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Alignment Details
Target: chr4 (Bit Score: 126; Significance: 4e-65; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 19 - 144
Target Start/End: Complemental strand, 3538856 - 3538731
Alignment:
| Q |
19 |
acccaaaccctcaaaaggtcaaagtaaagccataaaaagcaaacaatataaaaatttcaattcattttaacctttcatgacaaggaactttgtgtgggga |
118 |
Q |
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| T |
3538856 |
acccaaaccctcaaaaggtcaaagtaaagccataaaaagcaaacaatataaaaatttcaattcattttaacctttcatgacaaggaactttgtgtgggga |
3538757 |
T |
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| Q |
119 |
tccatcttgttgttattcgcattgtt |
144 |
Q |
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| T |
3538756 |
tccatcttgttgttattcgcattgtt |
3538731 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 98 - 216
Target Start/End: Complemental strand, 3538628 - 3538510
Alignment:
| Q |
98 |
acaaggaactttgtgtggggatccatcttgttgttattcgcattgtttaccttggtcggaaatctgggtggttgttctgcgctttatatttaaagcaagc |
197 |
Q |
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| T |
3538628 |
acaaggaactctgtgtggggatccatcttgttgttattcgcattgttcaccttggtcggaaatctgggtggttgttctgagctttatatttaaagcaagc |
3538529 |
T |
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| Q |
198 |
agcttcatcgttgatgatg |
216 |
Q |
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| T |
3538528 |
agcttcatcgttgatgatg |
3538510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 21 - 98
Target Start/End: Original strand, 3545783 - 3545860
Alignment:
| Q |
21 |
ccaaaccctcaaaaggtcaaagtaaagccataaaaagcaaacaatataaaaatttcaattcattttaacctttcatga |
98 |
Q |
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| T |
3545783 |
ccaaatcctcaaaaggtcaaaataaagccataaaacgcaaacaacatacaaatttcatttttttttaatcgttcatga |
3545860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 22 - 56
Target Start/End: Complemental strand, 5272325 - 5272291
Alignment:
| Q |
22 |
caaaccctcaaaaggtcaaagtaaagccataaaaa |
56 |
Q |
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| T |
5272325 |
caaaccctcaaaaggtcaaagtaaagccataaaaa |
5272291 |
T |
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