View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20042_low_33 (Length: 209)
Name: NF20042_low_33
Description: NF20042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20042_low_33 |
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Alignment Details
Target: chr8 (Bit Score: 54; Significance: 3e-22; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 19 - 72
Target Start/End: Original strand, 9816186 - 9816239
Alignment:
| Q |
19 |
gttacactgtatatagataatagaagagaagaaagttatttaggaattttcaga |
72 |
Q |
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| T |
9816186 |
gttacactgtatatagataatagaagagaagaaagttatttaggaattttcaga |
9816239 |
T |
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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 160 - 193
Target Start/End: Original strand, 9819141 - 9819174
Alignment:
| Q |
160 |
gaagaatgctaaaggggtatgttgcagttttctt |
193 |
Q |
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| T |
9819141 |
gaagaatgctaaaggggtatgttgcagttttctt |
9819174 |
T |
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Target: chr4 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 149 - 190
Target Start/End: Original strand, 38871237 - 38871278
Alignment:
| Q |
149 |
tgggctttaatgaagaatgctaaaggggtatgttgcagtttt |
190 |
Q |
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| T |
38871237 |
tgggctttaatgaagaatgctaaaggggtatgttgcagtttt |
38871278 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 28 - 68
Target Start/End: Original strand, 38868490 - 38868530
Alignment:
| Q |
28 |
tatatagataatagaagagaagaaagttatttaggaatttt |
68 |
Q |
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| T |
38868490 |
tatatagataatagaagagaagaaagttatttaggaatttt |
38868530 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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