View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20042_low_6 (Length: 518)
Name: NF20042_low_6
Description: NF20042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20042_low_6 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 405; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 1 - 502
Target Start/End: Complemental strand, 39197285 - 39196784
Alignment:
| Q |
1 |
tcctatagtagtattacaaatgtcaatgaaaaagggtacatagcgcacaatattttgtggcatgtcaaaatcaatatcatgtcatcttcaagatgagtta |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
39197285 |
tcctatagtagtattacaaatgtcaatgaaaaagggtacatagcgcacaatattttgtgacatgtcaaaatcaatatcatgtcatcttcaagatgagtta |
39197186 |
T |
|
| Q |
101 |
taggtaaacatcaagcgtctcggtgagcttaactcacttgataagagataatatatatattttatacgg-ggtcagagttcgaactccggacacttcact |
199 |
Q |
| |
|
|||||||||||||| |||||| |||||||||||||||||||||||||||||||||||| |||||| | |||||||||||||||||||||||||||||| |
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| T |
39197185 |
taggtaaacatcaaacgtctccgtgagcttaactcacttgataagagataatatatat--tttatatgaaggtcagagttcgaactccggacacttcact |
39197088 |
T |
|
| Q |
200 |
tattcaccaccaataaatctttttagctgatagactgcttgatnnnnnnnnggtaaacaccaagcgaagtcaaaaagaaagaagagccaaacaaatgtga |
299 |
Q |
| |
|
|||||||| ||||| ||||||| ||| ||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| |||||| |
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| T |
39197087 |
tattcacctccaatgaatctttctagtcgatagactgcttgataaaaaaaaggtaaacaacaagcgaagtcaaaaagaaagaagagccaaacagatgtga |
39196988 |
T |
|
| Q |
300 |
cggattccttatttgttttctattagttaggtcatgcaaaatggacaacacataactgtaggtaggtagtaaaagacaaacttctaaaatctaatagccc |
399 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39196987 |
cggattccttatttgttttctattagttaggtcatgcaaaatggacaacacataactgtaggtaggtagtaaaagacaaacttctaaaatctaatagccc |
39196888 |
T |
|
| Q |
400 |
gtccttaaatagaccaaaaagctcataaggaaaagctagcaaccttgcatgattccaacataaaagcttaacaaca-aagtagttcttctttccagcatc |
498 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
39196887 |
gtccttaaatagaccaaaaagctcataaggaaaagctagcaaccttgcatgattccaacataaaagcttaacaacagaagtagttcttctttccagcatc |
39196788 |
T |
|
| Q |
499 |
atgg |
502 |
Q |
| |
|
|||| |
|
|
| T |
39196787 |
atgg |
39196784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 318 - 502
Target Start/End: Complemental strand, 39218538 - 39218356
Alignment:
| Q |
318 |
tctattagttaggtcatgcaaaatggacaacacataactgtaggtaggtagtaaaagacaaacttctaaaatctaatagcccgtccttaaatagaccaaa |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| | ||| ||| ||||||||||||||||||| ||| ||| ||||||||||||||| |||||| |
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| T |
39218538 |
tctattagttaggtcatgcaaaatggacaatgtataattttagttag---gtaaaagacaaacttctaagatcaaattgcccgtccttaaatataccaaa |
39218442 |
T |
|
| Q |
418 |
aagctcataaggaaaagctagcaaccttgcatgattccaacataaaagcttaacaaca-aagtagttcttctttccagcatcatgg |
502 |
Q |
| |
|
||||||||||| | ||||||||| |||||||||||||||| ||||||||||||||||| | ||||||||||||||||||||||||| |
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|
| T |
39218441 |
aagctcataagaataagctagcagccttgcatgattccaagataaaagcttaacaacacacgtagttcttctttccagcatcatgg |
39218356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 318 - 502
Target Start/End: Complemental strand, 39225636 - 39225454
Alignment:
| Q |
318 |
tctattagttaggtcatgcaaaatggacaacacataactgtaggtaggtagtaaaagacaaacttctaaaatctaatagcccgtccttaaatagaccaaa |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| | ||| ||| ||||||||||||||||||| ||| ||| ||||||||||||||| |||||| |
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|
| T |
39225636 |
tctattagttaggtcatgcaaaatggacaatgtataattttagttag---gtaaaagacaaacttctaagatcaaattgcccgtccttaaatataccaaa |
39225540 |
T |
|
| Q |
418 |
aagctcataaggaaaagctagcaaccttgcatgattccaacataaaagcttaacaaca-aagtagttcttctttccagcatcatgg |
502 |
Q |
| |
|
||||||||||| | ||||||||| |||||||||||||||| ||||||||||||||||| | ||||||||||||||||||||||||| |
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|
| T |
39225539 |
aagctcataagaataagctagcagccttgcatgattccaagataaaagcttaacaacacacgtagttcttctttccagcatcatgg |
39225454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 20 - 116
Target Start/End: Complemental strand, 39225875 - 39225779
Alignment:
| Q |
20 |
atgtcaatgaaaaagggtacatagcgcacaatattttgtggcatgtcaaaatcaatatcatgtcatcttcaagatgagttataggtaaacatcaagc |
116 |
Q |
| |
|
|||||| |||||||||| ||||||| |||| |||||||| |||||||||||||||||||||||||||||||||| ||||| | ||||||| ||||| |
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|
| T |
39225875 |
atgtcactgaaaaagggaacatagcacacaccattttgtgccatgtcaaaatcaatatcatgtcatcttcaagataagttaaatgtaaacaccaagc |
39225779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 168 - 207
Target Start/End: Original strand, 19608656 - 19608695
Alignment:
| Q |
168 |
ggggtcagagttcgaactccggacacttcacttattcacc |
207 |
Q |
| |
|
|||||| | ||||||||||||||||||||||||||||||| |
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|
| T |
19608656 |
ggggtcggggttcgaactccggacacttcacttattcacc |
19608695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 170 - 206
Target Start/End: Original strand, 30733165 - 30733201
Alignment:
| Q |
170 |
ggtcagagttcgaactccggacacttcacttattcac |
206 |
Q |
| |
|
|||||| |||||||||||||||||| ||||||||||| |
|
|
| T |
30733165 |
ggtcagggttcgaactccggacactccacttattcac |
30733201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 170 - 207
Target Start/End: Original strand, 10207690 - 10207727
Alignment:
| Q |
170 |
ggtcagagttcgaactccggacacttcacttattcacc |
207 |
Q |
| |
|
|||| ||||| ||||||||||||||||||||||||||| |
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|
| T |
10207690 |
ggtcggagtttgaactccggacacttcacttattcacc |
10207727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 124 - 152
Target Start/End: Original strand, 54457153 - 54457181
Alignment:
| Q |
124 |
tgagcttaactcacttgataagagataat |
152 |
Q |
| |
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||||||||||||||||||||||||||||| |
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|
| T |
54457153 |
tgagcttaactcacttgataagagataat |
54457181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 175 - 207
Target Start/End: Original strand, 24636774 - 24636806
Alignment:
| Q |
175 |
gagttcgaactccggacacttcacttattcacc |
207 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| |
|
|
| T |
24636774 |
gagttcgaactccggacacctcacttattcacc |
24636806 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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