View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20043_high_1 (Length: 480)
Name: NF20043_high_1
Description: NF20043
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20043_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 421; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 17 - 472
Target Start/End: Original strand, 36284337 - 36284790
Alignment:
| Q |
17 |
ataaggtacattttgaagagcggaaaagtgcttaagaggaccacaatttatttcggaagtagctgggaaccaagcgaggcaagagatgctgtgtcggaat |
116 |
Q |
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|||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36284337 |
ataaggtacattttgaagagtggaaaagtgcttgagaggaccacaatttatttcggaagtagctgggaaccaagcgaggcaagagatgctgtgtcggaat |
36284436 |
T |
|
| Q |
117 |
tatgttccttgccaaaagcctcaaaagataacaggattatgtgcttcgaagttgccttgatggtatggattactaccttatctatttttagacacttaac |
216 |
Q |
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| T |
36284437 |
tatgttccttgccaaaagcctcaaaagataacaggattatgtgcttcgaagttgccttgatggtatggattacttccttatctatttttagacacttaac |
36284536 |
T |
|
| Q |
217 |
gagtttaagcttgtgtagatttaatgtgtgtgtatgaatttagttctatttttatccattcggatatggatgtcctaagatttctagatgtcgcacgctt |
316 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36284537 |
gagtttaagcttgtgtagatttaa--tgtgtgtatgaatttagttctatttttatccattcggatatggatgtcctaagatttctagatgtcgcacgctt |
36284634 |
T |
|
| Q |
317 |
atgaattgttgtaaaattgcattggggacaacaaaataatgtgtcttgttgtctctttatggcgcaactccttcaatgttattgattttttatgattcta |
416 |
Q |
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| T |
36284635 |
atgaattgttgtaaaattgcattagggacaacaaaataacgtgtcttgttgtctctttatggcgcgactccttcaatgttattgattttttatgattcta |
36284734 |
T |
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| Q |
417 |
taatctatatgttaattttcattgttttgaattaggtgaatttctgttgatgatgt |
472 |
Q |
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| T |
36284735 |
taatctatatgttaattttcattgttttgaattaggtgaatttctgttgatgatgt |
36284790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 17 - 152
Target Start/End: Original strand, 34555201 - 34555339
Alignment:
| Q |
17 |
ataaggtacattttgaagagcggaaaagtgcttaagaggaccacaatttatttcggaagtagctg--ggaa-ccaagcgaggcaagagatgctgtgtcgg |
113 |
Q |
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||||| |||||||| || || ||||||||||||||||| |||||||||||||| | |||||||| |||| ||||||||| |||| |||||||||| || |
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| T |
34555201 |
ataagttacattttaaatagtggaaaagtgcttaagagaaccacaatttattttgagagtagctgctggaatccaagcgagacaagtgatgctgtgttgg |
34555300 |
T |
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| Q |
114 |
aattatgttccttgccaaaagcctcaaaagataacagga |
152 |
Q |
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|||||| ||||||||||| |||||||||||||||||||| |
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| T |
34555301 |
aattatcttccttgccaagagcctcaaaagataacagga |
34555339 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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