View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20043_low_1 (Length: 554)
Name: NF20043_low_1
Description: NF20043
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20043_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 408; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 1 - 464
Target Start/End: Complemental strand, 4927212 - 4926750
Alignment:
| Q |
1 |
aaggaattagctcaatgctgtgttcaacgaaggaatcttgaaagcttgtagaaaattgtgtgatgacttgacacttgaaagaattaaggaattaaattta |
100 |
Q |
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| T |
4927212 |
aaggaattagctcaatgctgtgttcaacgaaggaatcttgaaagcttgtagaaaattgtgtgatgacttgacacttgaaagaattaaggaattaaattta |
4927113 |
T |
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| Q |
101 |
ttaaacttttgtatgcttcctcgaaactacagatttctaccttgatgaaaaacaaagacgaacataacagctcatcacacatcgtgaacataaaaatttg |
200 |
Q |
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| T |
4927112 |
ttaaacttttgtatgcttcctcgaaactacagatttctaccttgatgaaaagcaaagacgaacataacagctcatcacacatcgtgaacataaaaatttg |
4927013 |
T |
|
| Q |
201 |
aacacatcttttagatccactcagaaaaaaggaaatatgaataattaaataaagtatgtactctttttacgagtgaccggcaaaataacgtgtctcaata |
300 |
Q |
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| T |
4927012 |
aacacatcttttagatccactcagaaaaaaggaaatatgaataattaaataaagtatgtactctttttacgagtgaccggcaaaataacgtgtctcaata |
4926913 |
T |
|
| Q |
301 |
tttgtgtcaattcaaaaattactcttaattcaaaaataaagtatgtannnnnnnncttttccgagttaataggtactccctccgttatatactcttaatt |
400 |
Q |
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| T |
4926912 |
tttgtgtcaattcaaaaattactcttaattcaaaaataaagtatgtacttttttt-tcttccgagttaataggtactccctcctttatatactcttaatt |
4926814 |
T |
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| Q |
401 |
ttatttgagttttacatagttattaaaaaatgggttatatatatgtttttgatccctttaaaat |
464 |
Q |
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| T |
4926813 |
ttatttgagttttacatggttattaaaaaatgggttatatatatgtttttggtcccttttaaat |
4926750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 89 - 134
Target Start/End: Complemental strand, 4920847 - 4920802
Alignment:
| Q |
89 |
gaattaaatttattaaacttttgtatgcttcctcgaaactacagat |
134 |
Q |
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| T |
4920847 |
gaattaaatttattaaactttcgtatgcttcctcgaaactacagat |
4920802 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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