View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20043_low_4 (Length: 247)
Name: NF20043_low_4
Description: NF20043
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20043_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 205; Significance: 1e-112; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 19 - 235
Target Start/End: Original strand, 37838315 - 37838531
Alignment:
| Q |
19 |
ctttcattggcattacaatgcacagagaaggatccacgaaggaggccgaccatgaaagatgttattgacttttataataattacctgtttaagctgaggt |
118 |
Q |
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| T |
37838315 |
ctttcattggcattacaatgcacagagaaggatccacgaaggaggccgaccatgaaagatgttattgacttttataataactacctgtttaagctaaggt |
37838414 |
T |
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| Q |
119 |
gtgatgatgttcaatatggtataggactttcaattaaactgatgggaaatggtaaattgctggctcaaaaggttgttggcgtattgaatctagttcttcc |
218 |
Q |
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| T |
37838415 |
gtgatgaagttcaatatggtataggactttcaattaaactgatgggaaatggtaaattgctggctcaaaaggttgttggcgtattgaatctagttcttcc |
37838514 |
T |
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| Q |
219 |
aaaaataacctatgctt |
235 |
Q |
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||||||||||||||||| |
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| T |
37838515 |
aaaaataacctatgctt |
37838531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 19 - 235
Target Start/End: Original strand, 37851644 - 37851860
Alignment:
| Q |
19 |
ctttcattggcattacaatgcacagagaaggatccacgaaggaggccgaccatgaaagatgttattgacttttataataattacctgtttaagctgaggt |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||| | |||||||||| |||||| | |||||||||||| ||||||||||| |||||| |
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| T |
37851644 |
ctttcattggcattacaatgcacagagaaggatccacgaaagaggacaaccatgaaagttgttataggcttttataataagaacctgtttaagatgaggt |
37851743 |
T |
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| Q |
119 |
gtgatgatgttcaatatggtataggactttcaattaaactgatgggaaatggtaaattgctggctcaaaaggttgttggcgtattgaatctagttcttcc |
218 |
Q |
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| T |
37851744 |
atgatgaggtgcaatatggtgatggacttgtagtggaactgatgggaaatggtaagattcagtataaaaaagtttttggcatagcgaatctagttgttcc |
37851843 |
T |
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| Q |
219 |
aaaaataacctatgctt |
235 |
Q |
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||||||||||||||||| |
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| T |
37851844 |
aaaaataacctatgctt |
37851860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 19 - 173
Target Start/End: Original strand, 37832792 - 37832946
Alignment:
| Q |
19 |
ctttcattggcattacaatgcacagagaaggatccacgaaggaggccgaccatgaaagatgttattgacttttataataattacctgtttaagctgaggt |
118 |
Q |
| |
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|||||||||||||||| ||||| |||||||||||||||| |||||||||||||||| ||||||| |||| |||||| || ||||||||||||||| |
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| T |
37832792 |
ctttcattggcattacgatgcatagagaaggatccacgagataggccgaccatgaaaggtgttattcgtttttttaataacaacttgtttaagctgaggt |
37832891 |
T |
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| Q |
119 |
gtgatgatgttcaatatggtataggactttcaattaaactgatgggaaatggtaa |
173 |
Q |
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| T |
37832892 |
gtgatgaggttcaatatggcgatggacttacaattaaactgatgggaaacggtaa |
37832946 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 43 - 173
Target Start/End: Original strand, 35025306 - 35025436
Alignment:
| Q |
43 |
gagaaggatccacgaaggaggccgaccatgaaagatgttattgacttttataataattacctgtttaagctgaggtgtgatgatgttcaatatggtatag |
142 |
Q |
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|||||||||| |||||||||||||||||| ||||||||||||| |||||||||||| || |||||||||| | | ||||| | | |||||| || | |
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| T |
35025306 |
gagaaggatcaacgaaggaggccgaccattaaagatgttattggcttttataataagaacttgtttaagctaatgagtgataagatgcaatattgtgatg |
35025405 |
T |
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| Q |
143 |
gactttcaattaaactgatgggaaatggtaa |
173 |
Q |
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||||| ||||||||| |||||||||||||| |
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| T |
35025406 |
gacttgtaattaaactaatgggaaatggtaa |
35025436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 24 - 95
Target Start/End: Original strand, 37845779 - 37845850
Alignment:
| Q |
24 |
attggcattacaatgcacagagaaggatccacgaaggaggccgaccatgaaagatgttattgacttttataa |
95 |
Q |
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||||||||| |||||||||| || |||| |||| ||| |||||||||||||||||||||||||| ||||| |
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| T |
37845779 |
attggcattgcaatgcacagcgacagatctgcgaaagagaccgaccatgaaagatgttattgacttgtataa |
37845850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 85
Target Start/End: Original strand, 37844166 - 37844227
Alignment:
| Q |
24 |
attggcattacaatgcacagagaaggatccacgaaggaggccgaccatgaaagatgttattg |
85 |
Q |
| |
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||||||||| ||||| |||||||||||| ||||| ||| || | ||||||||||||||||| |
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| T |
37844166 |
attggcattgcaatgtacagagaaggatttacgaaagagaccaatcatgaaagatgttattg |
37844227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 87; Significance: 8e-42; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 19 - 173
Target Start/End: Original strand, 36866996 - 36867150
Alignment:
| Q |
19 |
ctttcattggcattacaatgcacagagaaggatccacgaaggaggccgaccatgaaagatgttattgacttttataataattacctgtttaagctgaggt |
118 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| || ||||||||||||||| |
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| T |
36866996 |
ctttcattggcattacaatgcacagagaaggatccacgaaggaggccaaccatgaaagatgttattgccttttataatacgaacttgtttaagctgaggt |
36867095 |
T |
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| Q |
119 |
gtgatgatgttcaatatggtataggactttcaattaaactgatgggaaatggtaa |
173 |
Q |
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||||| | || ||||| || |||||| ||||||||| |||||||||||||| |
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| T |
36867096 |
gtgataaggtgaaatattgtgatggacttgtaattaaactaatgggaaatggtaa |
36867150 |
T |
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