View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20044_high_8 (Length: 290)
Name: NF20044_high_8
Description: NF20044
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20044_high_8 |
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Alignment Details
Target: chr2 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 19 - 281
Target Start/End: Complemental strand, 3433334 - 3433072
Alignment:
| Q |
19 |
cgtacatctcctctttacgatgaactccgaaatgcaaatcatcaacctccaacactcatagactttaactatgtacctggcgatgatagcgatgaagttg |
118 |
Q |
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| T |
3433334 |
cgtacatctcctctttacgatgaactccgaaatgcaaatcatcaacctccaacactcatagactttaactatgtacctggcgatgatagcgatgaagttg |
3433235 |
T |
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| Q |
119 |
atgaaaatgaaaggatctccacaaaccttactataatgtatagacaggttgtgtctggtggaaaaacctcaagacttttcctcggaaacccttaccgtgc |
218 |
Q |
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| T |
3433234 |
atgaaaatgaaaggatctccacaaaccttactataatgtatagacaggttgtgtctggtggaaaaacctcaacacttttcctcggaaacccttaccgtgc |
3433135 |
T |
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| Q |
219 |
tggagatgcaccggatcccggtgctggatccgtagagattgttccacataatatagttcatct |
281 |
Q |
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| T |
3433134 |
tggagatgcaccggatcccggtgctggatccgtagagattgttccacataatatagttcatct |
3433072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 19 - 267
Target Start/End: Complemental strand, 3427143 - 3426904
Alignment:
| Q |
19 |
cgtacatctcctctttacgatgaactccgaaatgcaaatcatcaacctccaacactcatagactttaactatgtacctggcgatgatagcgatgaagttg |
118 |
Q |
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| T |
3427143 |
cgtacatctcctctttacgatgaactccgaaatgcaaatcatcaacctccaacactcatagacttaaacta------tgacggtga---cgatgaaaatg |
3427053 |
T |
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| Q |
119 |
atgaaaatgaaaggatctccacaaaccttactataatgtatagacaggttgtgtctggtggaaaaacctcaagacttttcctcggaaacccttaccgtgc |
218 |
Q |
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| T |
3427052 |
atgaaaatgaaagaatctccacaaaccttactataatgtatagacaacttgtctcaaatggaaaaacttcaactctattcctcggaagctcttaccgtgc |
3426953 |
T |
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| Q |
219 |
tggagatgcaccggatcccggtgctggatccgtagagattgttccacat |
267 |
Q |
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| T |
3426952 |
cggtgatcaacccgatccaggtgctggatccatagagaatgttccacat |
3426904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 21 - 279
Target Start/End: Original strand, 11897135 - 11897390
Alignment:
| Q |
21 |
tacatctcctctttacgatgaactccgaaatgcaaatcatcaacctccaacactcatagactttaactatgtacctggcgatgatagcgatgaagttgat |
120 |
Q |
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| T |
11897135 |
tacatctcctctttacgacaaactccgaaatgcaaaacatcaacctccaacactcatagacttcaactatggtcactgcgatgacatcgatgaagatggt |
11897234 |
T |
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| Q |
121 |
gaaaatgaaaggatctccacaaaccttactataatgtatagacaggttgtgtctggtggaaaaacctcaagacttttcctcggaaacccttaccgtgctg |
220 |
Q |
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| T |
11897235 |
gaaaataacataatccacacaaaccttactataatgtatagacaggttgtgtctagaggaaaaaactcaagacttttcctcggatacccttaccgtgctg |
11897334 |
T |
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| Q |
221 |
gagatgcaccggatcccggtgctggatccgtagagattgttccacataatatagttcat |
279 |
Q |
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| T |
11897335 |
gaggtgtaccgaa---atgtgctggatccgtagagattgttcctcataatacagttcat |
11897390 |
T |
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