View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20044_high_9 (Length: 279)
Name: NF20044_high_9
Description: NF20044
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20044_high_9 |
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Alignment Details
Target: chr7 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 16 - 260
Target Start/End: Original strand, 45783916 - 45784160
Alignment:
| Q |
16 |
attaggttagctgtgattgatcatgttacttctatgccttgtgttgtgattcctgtgaaggacttgattcagatttgtagagaggaaggtgttgaacagg |
115 |
Q |
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| T |
45783916 |
attaggttagctgtgattgatcatgttacttctatgccttgtgttgtgattcctgtgaaggaattgattcagatttgtagagaggaaggtgttgaacagg |
45784015 |
T |
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| Q |
116 |
tttttgttgatgctgctcattcaattggctgtactgatgttgatatgcaagatattggtgctgatttttataccagtaatttgcataagtggttcttctg |
215 |
Q |
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| T |
45784016 |
tttttgttgatgctgctcattcaattggctgtactgatgttgatatgcaagatattggtgctgatttttataccagtaatttgcataagtggttcttctg |
45784115 |
T |
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| Q |
216 |
tccaccttcgatcgcgtttttgtatactaaaaagaatcctaaaac |
260 |
Q |
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| T |
45784116 |
tccaccttcgatcgcttttttgtatactaaaaagaatcctaaaac |
45784160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 154 - 225
Target Start/End: Complemental strand, 37807273 - 37807202
Alignment:
| Q |
154 |
gttgatatgcaagatattggtgctgatttttataccagtaatttgcataagtggttcttctgtccaccttcg |
225 |
Q |
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| T |
37807273 |
gttgatatgcaagagattggagctgatttttacacaagtaatttgcataagtggtttttttgtccaccttcg |
37807202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 135
Target Start/End: Complemental strand, 37807413 - 37807295
Alignment:
| Q |
17 |
ttaggttagctgtgattgatcatgttacttctatgccttgtgttgtgattcctgtgaaggacttgattcagatttgtagagaggaaggtgttgaacaggt |
116 |
Q |
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| T |
37807413 |
ttagattagcggttattgatcatgtgacttccatgccaagcatggtgattccggtgaaagagttagttaagatttgtcgcgaggaaggtgttgatcaagt |
37807314 |
T |
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| Q |
117 |
ttttgttgatgctgctcat |
135 |
Q |
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| T |
37807313 |
tttcgttgatgcagctcat |
37807295 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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