View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20044_low_12 (Length: 319)
Name: NF20044_low_12
Description: NF20044
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20044_low_12 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 100; Significance: 2e-49; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 134 - 302
Target Start/End: Complemental strand, 49221788 - 49221621
Alignment:
| Q |
134 |
ttagttggtgatggttcccaataagataaaataagctttcacgatccaacgaccttcttttgagnnnnnnntatcaaatggttaaaagtgaattttttaa |
233 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| | ||||||||||||||| | |||||||||| |
|
|
| T |
49221788 |
ttagttggtgatggttccctataagataaaataagctttcacgatccaatgaccttcttttttgaaaaaaa-atcaaatggttaaaattaaattttttaa |
49221690 |
T |
|
| Q |
234 |
taaggttcagggtggaccacctaaattttggtccacctaagacattttgggttaatccattaacagaag |
302 |
Q |
| |
|
||||||| | |||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
49221689 |
taaggtttacggtggatcacctaaattttggtccacctaagacattttgggttaatccattaacggaag |
49221621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 134 - 302
Target Start/End: Original strand, 6242474 - 6242641
Alignment:
| Q |
134 |
ttagttggtgatggttcccaataagataaaataagctttcacgatccaacgaccttcttttgagnnnnnnntatcaaatggttaaaagtgaattttttaa |
233 |
Q |
| |
|
||||||||||||| || || ||||||||||| | ||||||| |||||||||||| |||||| || ||||||||||||||| | |||||||||| |
|
|
| T |
6242474 |
ttagttggtgatgatttcctataagataaaaaaggctttcatgatccaacgaccctcttttaagaaaaaag-atcaaatggttaaaattaaattttttaa |
6242572 |
T |
|
| Q |
234 |
taaggttcagggtggaccacctaaattttggtccacctaagacattttgggttaatccattaacagaag |
302 |
Q |
| |
|
|| |||| | |||||||||||||||| ||||||||| |||||||||| ||||||| |||||| |||| |
|
|
| T |
6242573 |
tatggtttacggtggaccacctaaatcttggtccacttaagacatttgaggttaatatattaacggaag |
6242641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 134 - 302
Target Start/End: Complemental strand, 29466036 - 29465869
Alignment:
| Q |
134 |
ttagttggtgatggttcccaataagataaaataagctttcacgatccaacgaccttcttttgagnnnnnnntatcaaatggttaaaagtgaattttttaa |
233 |
Q |
| |
|
||||||||||||| || || ||||||||||||| ||||||| ||||||||| || |||||| || ||||||||||||||| | |||||||||| |
|
|
| T |
29466036 |
ttagttggtgatgatttcctataagataaaataggctttcatgatccaacggccctcttttaagaaaaaag-atcaaatggttaaaattaaattttttaa |
29465938 |
T |
|
| Q |
234 |
taaggttcagggtggaccacctaaattttggtccacctaagacattttgggttaatccattaacagaag |
302 |
Q |
| |
|
|| |||| | ||||||||||||||| ||||||||| |||||||||| ||||||| |||||| |||| |
|
|
| T |
29465937 |
tatggtttacagtggaccacctaaatcttggtccacttaagacatttgaggttaatatattaacggaag |
29465869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 54; Significance: 5e-22; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 134 - 280
Target Start/End: Complemental strand, 40738474 - 40738329
Alignment:
| Q |
134 |
ttagttggtgatggttcccaataagataaaataagctttcacgatccaacgaccttcttttgagnnnnnnntatcaaatggttaaaagtgaattttttaa |
233 |
Q |
| |
|
||||||||||||| || || ||||||||||||| ||||||| |||||||||||| |||||| || ||||||||||||||| | |||||||||| |
|
|
| T |
40738474 |
ttagttggtgatgatttcctataagataaaataggctttcatgatccaacgaccctcttttaagaaaaaac-atcaaatggttaaaattaaattttttaa |
40738376 |
T |
|
| Q |
234 |
taaggttcagggtggaccacctaaattttggtccacctaagacattt |
280 |
Q |
| |
|
|| | || | |||||||||||||||| |||| |||| |||||||||| |
|
|
| T |
40738375 |
tatgatttacggtggaccacctaaatcttggcccacttaagacattt |
40738329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 209 - 280
Target Start/End: Complemental strand, 34598929 - 34598857
Alignment:
| Q |
209 |
aaatggttaaaagtgaatttttt-aataaggttcagggtggaccacctaaattttggtccacctaagacattt |
280 |
Q |
| |
|
|||||||||||| | |||||||| ||||||||| | |||||||||||||||| ||||||||||| |||||||| |
|
|
| T |
34598929 |
aaatggttaaaatttaatttttttaataaggtttatggtggaccacctaaatcttggtccaccttagacattt |
34598857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 136 - 298
Target Start/End: Original strand, 3606818 - 3606979
Alignment:
| Q |
136 |
agttggtgatggttcccaataagataaaataagctttcacgatccaacgaccttcttttgagnnnnnnntatcaaatggttaaaagtgaattttttaata |
235 |
Q |
| |
|
||||||||||| || || ||||||||||||| ||||||| ||||||||| || |||||| || ||||||||||||||| | | |||||||||| |
|
|
| T |
3606818 |
agttggtgatgatttcctataagataaaataggctttcatgatccaacggccctcttttaagaaaaaag-atcaaatggttaaaattaatttttttaata |
3606916 |
T |
|
| Q |
236 |
aggttcagggtggaccacctaaattttggtccacctaagacattttgggttaatccattaaca |
298 |
Q |
| |
|
|||| | |||||||||||||||| ||||||||| |||||||||| ||||||| ||||||| |
|
|
| T |
3606917 |
tggtttacggtggaccacctaaatcttggtccacttaagacatttgaggttaatatattaaca |
3606979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University