View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20044_low_13 (Length: 295)
Name: NF20044_low_13
Description: NF20044
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20044_low_13 |
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Alignment Details
Target: chr6 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 13 - 278
Target Start/End: Original strand, 24134778 - 24135044
Alignment:
| Q |
13 |
gagactcctcaaacaatctcctagcttgtaacaaatctccattcggggaatatctggaaatcatggtatgccaagaaattacatcccgaaaaagcatatg |
112 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||| | ||||| | |||||| ||||| ||||||||||||||||| || ||||||||| |
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| T |
24134778 |
gagactcctcaaacaatctcctagcttgtaacaaatatccattcggtgcatatccgaaaatcagggtattccaagaaattacatccctaacaagcatatg |
24134877 |
T |
|
| Q |
113 |
atcaaaaaatctcctagcatcacccaacatctttctcttcacatacatacccataaaacaattccacaaaatcaatttccaatcctccttcgacgagcct |
212 |
Q |
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||||||||||||||||||||||||||||||| | |||||||||| | ||||||| |||||||||||||||||||||| ||||||| |||||||||||||| |
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| T |
24134878 |
atcaaaaaatctcctagcatcacccaacatcctcctcttcacattcctacccatcaaacaattccacaaaatcaattcccaatccaccttcgacgagcct |
24134977 |
T |
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| Q |
213 |
cctcaagtctcccattttgaacatacattacaagcaatccattccaaaagatgg-aatacttataag |
278 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| |
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| T |
24134978 |
cctcaagtctcccattttgaacatacactacaagcaatccattccaaaagatggaaatacttataag |
24135044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 13 - 277
Target Start/End: Original strand, 24137089 - 24137365
Alignment:
| Q |
13 |
gagactcctcaaacaatctcctagcttgtaacaaatctccattcggggaatatctggaaatcatggtatgccaagaaattacatcccgaaaaagcatatg |
112 |
Q |
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||||||||||||||||||||| |||| | ||||||||||||| ||| ||| | | |||| ||||||| ||||||||||||||||| || ||||| ||| |
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| T |
24137089 |
gagactcctcaaacaatctcccagctagaaacaaatctccatctgggccataaccgaaaattatggtattccaagaaattacatccctaacaagcacatg |
24137188 |
T |
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| Q |
113 |
atcaaaaaatctcctagcatcacccaacatctttctcttcacatacatacccataaaacaattccacaaaatcaatttccaatcctcct----------- |
201 |
Q |
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|||||||| ||| ||||||||||||||||||| ||||| |||||| ||||||| |||||||||||| |||||||| |||| || ||| |
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| T |
24137189 |
atcaaaaagtctaatagcatcacccaacatcttcctctt-acatacctacccatcaaacaattccacggaatcaattcccaaaccaccttcgactcaaac |
24137287 |
T |
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| Q |
202 |
--tcgacgagcctcctcaagtctcccattttgaacatacattacaagcaatccattccaaaagatggaatacttataa |
277 |
Q |
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||||||||||||||||||||||||||| |||||||||| | ||||||||||||||||| ||||||||| ||||||| |
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| T |
24137288 |
aatcgacgagcctcctcaagtctcccattctgaacatacactgcaagcaatccattccaagagatggaatccttataa |
24137365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 123; Significance: 3e-63; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 13 - 278
Target Start/End: Complemental strand, 45148811 - 45148533
Alignment:
| Q |
13 |
gagactcctcaaacaatctcctagcttgtaacaaatctccattcggggaatatctggaaatcatggtatgccaagaaattacatcccgaaaaagcatatg |
112 |
Q |
| |
|
|||||||||||||||| ||||| ||||||||||||||||||| | ||| ||| | |||||||||||||| |||||| ||| ||| || || | ||||||| |
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| T |
45148811 |
gagactcctcaaacaacctcctggcttgtaacaaatctccatcccgggcataaccggaaatcatggtattccaagagattgcattcctaacaggcatatg |
45148712 |
T |
|
| Q |
113 |
atcaaaaaatctcctagcatcacccaacatctttctcttcacatacatacccataaaacaattccacaaaatcaatttccaatcctcct----------- |
201 |
Q |
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|||||||| |||||||||||||||||||||||| |||||||||||| |||||| |||||||||||| ||||||||| ||||||| ||| |
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| T |
45148711 |
atcaaaaagtctcctagcatcacccaacatcttcctcttcacatacccacccatcaaacaattccacgaaatcaattcccaatccaccttcgactcaaac |
45148612 |
T |
|
| Q |
202 |
--tcgacgagcctcctcaagtctcccattttgaacatacattacaagcaatccattccaaaagatggaatacttataag |
278 |
Q |
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|||||||||||| |||||||||||||| |||||||||| | ||||||||||||||||| ||||||||| |||||||| |
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| T |
45148611 |
aatcgacgagcctcttcaagtctcccattctgaacatacactgcaagcaatccattccaagagatggaatccttataag |
45148533 |
T |
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