View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20044_low_2 (Length: 651)

Name: NF20044_low_2
Description: NF20044
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20044_low_2
NF20044_low_2
[»] chr2 (17 HSPs)
chr2 (305-633)||(6915171-6915499)
chr2 (458-556)||(10543505-10543603)
chr2 (458-556)||(10471307-10471405)
chr2 (458-556)||(28106207-28106305)
chr2 (458-538)||(27966389-27966469)
chr2 (458-556)||(10859023-10859121)
chr2 (389-445)||(10492777-10492833)
chr2 (394-446)||(28105350-28105402)
chr2 (389-452)||(10463585-10463648)
chr2 (405-452)||(10507349-10507396)
chr2 (389-440)||(10860707-10860758)
chr2 (389-451)||(10474161-10474223)
chr2 (389-445)||(7476566-7476622)
chr2 (389-440)||(10848803-10848854)
chr2 (475-537)||(9081351-9081413)
chr2 (389-446)||(7478731-7478788)
chr2 (465-529)||(10505487-10505551)
[»] chr1 (1 HSPs)
chr1 (1-299)||(50301326-50301625)
[»] chr7 (4 HSPs)
chr7 (458-556)||(15044800-15044898)
chr7 (385-456)||(15045570-15045641)
chr7 (553-629)||(15043985-15044061)
chr7 (305-358)||(15047553-15047606)
[»] chr8 (1 HSPs)
chr8 (390-441)||(44307022-44307073)
[»] chr5 (1 HSPs)
chr5 (458-556)||(33601026-33601124)


Alignment Details
Target: chr2 (Bit Score: 309; Significance: 1e-174; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 305 - 633
Target Start/End: Original strand, 6915171 - 6915499
Alignment:
Q  305 agaacctgtgtcagaggtagatgatgtacttgctgaagcgtttcttagcgatgatgagaacatttcagctgctgaccttgagggagcaattcgtagggct 404  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6915171 agaaactgtgtcagaggtagatgatgtacttgctgaagcgtttcttagtgatgatgagaacatttcagctgctgaccttgagggagcaattcgtagggct 6915270  T
Q  405 accatagcacggaaatttataccggtattcatgggtagtgctgtcaaaaacacgggggtacaaccacttctggatggtgtagttacttatttgccttgtc 504  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  6915271 accatagcacggaaatttataccggtattcatgggtagtgctgtcaaaaacacgggggtacaaccacttctggatggtgtagttagttatttgccttgtc 6915370  T
Q  505 cgattgaagttagtaattatgctcttgaccaatccaagaatgaggagaaggttcagctgactggaagtcccgatgggccccttgtagcattggctttcaa 604  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  6915371 cgattgaagttagtaattatgctcttgaccaatccaagaatgaggagaaggttcagctgactggaagtcccgatgggcctcttgtagcattggctttcaa 6915470  T
Q  605 gttggagcaaaggaagtttggtcagttaa 633  Q
    ||||||||||| |||||||||||||||||    
T  6915471 gttggagcaaacgaagtttggtcagttaa 6915499  T

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Target: chr2; HSP #2
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 458 - 556
Target Start/End: Complemental strand, 10543603 - 10543505
Alignment:
Q  458 gggggtacaaccacttctggatggtgtagttacttatttgccttgtccgattgaagttagtaattatgctcttgaccaatccaagaatgaggagaaggt 556  Q
    |||| |||||| |||| ||||||||||| ||| ||||||||| ||||| | ||||| ||||||||||||||| | |||||||||||||||||| |||||    
T  10543603 ggggttacaactacttttggatggtgtacttaattatttgccgtgtccaactgaagctagtaattatgctctcgtccaatccaagaatgaggaaaaggt 10543505  T

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Target: chr2; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 458 - 556
Target Start/End: Complemental strand, 10471405 - 10471307
Alignment:
Q  458 gggggtacaaccacttctggatggtgtagttacttatttgccttgtccgattgaagttagtaattatgctcttgaccaatccaagaatgaggagaaggt 556  Q
    |||| |||||| |||| ||||||||||| ||| ||||||||| ||||| | ||||| ||||||||||||||| | |||||| ||||||||||| |||||    
T  10471405 ggggctacaactacttttggatggtgtacttaattatttgccgtgtccaactgaagctagtaattatgctctcgtccaatctaagaatgaggaaaaggt 10471307  T

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Target: chr2; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 458 - 556
Target Start/End: Original strand, 28106207 - 28106305
Alignment:
Q  458 gggggtacaaccacttctggatggtgtagttacttatttgccttgtccgattgaagttagtaattatgctcttgaccaatccaagaatgaggagaaggt 556  Q
    |||| |||||| |||| ||||||||||| ||| ||||||||| ||||| ||||||| |||||||||| ||||||||||||| ||| ||| ||| |||||    
T  28106207 ggggctacaactacttttggatggtgtaattaattatttgccgtgtccaattgaagctagtaattatactcttgaccaatctaagcatggggaaaaggt 28106305  T

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Target: chr2; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 458 - 538
Target Start/End: Complemental strand, 27966469 - 27966389
Alignment:
Q  458 gggggtacaaccacttctggatggtgtagttacttatttgccttgtccgattgaagttagtaattatgctcttgaccaatc 538  Q
    |||| |||||| |||| ||||||||||| ||| ||||||||| ||||| ||||||| |||||||||| |||||||||||||    
T  27966469 ggggctacaactacttttggatggtgtaattaattatttgccgtgtccaattgaagctagtaattatactcttgaccaatc 27966389  T

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Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 458 - 556
Target Start/End: Complemental strand, 10859121 - 10859023
Alignment:
Q  458 gggggtacaaccacttctggatggtgtagttacttatttgccttgtccgattgaagttagtaattatgctcttgaccaatccaagaatgaggagaaggt 556  Q
    |||| |||||| |||| |||||||||||  || ||||||||| ||||| | |||||||||||||||| |||| ||| |||| ||||||| ||| |||||    
T  10859121 ggggctacaactacttttggatggtgtaactaattatttgccctgtccaactgaagttagtaattattctctcgacaaatctaagaatggggaaaaggt 10859023  T

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Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 389 - 445
Target Start/End: Complemental strand, 10492833 - 10492777
Alignment:
Q  389 agcaattcgtagggctaccatagcacggaaatttataccggtattcatgggtagtgc 445  Q
    ||||||||||||||| ||||||||||  |||||| ||||||| ||||||||||||||    
T  10492833 agcaattcgtagggcaaccatagcacataaatttgtaccggttttcatgggtagtgc 10492777  T

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Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 394 - 446
Target Start/End: Original strand, 28105350 - 28105402
Alignment:
Q  394 ttcgtagggctaccatagcacggaaatttataccggtattcatgggtagtgct 446  Q
    |||||||||| |||||||||||||| |||||||| ||||||||||||| ||||    
T  28105350 ttcgtagggccaccatagcacggaagtttataccagtattcatgggtaatgct 28105402  T

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Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 389 - 452
Target Start/End: Complemental strand, 10463648 - 10463585
Alignment:
Q  389 agcaattcgtagggctaccatagcacggaaatttataccggtattcatgggtagtgctgtcaaa 452  Q
    |||||||||||| || || ||||||||||||||||||||  | ||||||||||||||| |||||    
T  10463648 agcaattcgtagagccacgatagcacggaaatttataccatttttcatgggtagtgctttcaaa 10463585  T

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Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 405 - 452
Target Start/End: Complemental strand, 10507396 - 10507349
Alignment:
Q  405 accatagcacggaaatttataccggtattcatgggtagtgctgtcaaa 452  Q
    ||||||||||||||||||||||| ||||||||||| |||||| |||||    
T  10507396 accatagcacggaaatttatacccgtattcatgggcagtgctttcaaa 10507349  T

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Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 389 - 440
Target Start/End: Complemental strand, 10860758 - 10860707
Alignment:
Q  389 agcaattcgtagggctaccatagcacggaaatttataccggtattcatgggt 440  Q
    |||| |||||||||  ||||||||||||||||||||||| ||||||||||||    
T  10860758 agcagttcgtagggtcaccatagcacggaaatttataccagtattcatgggt 10860707  T

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Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 389 - 451
Target Start/End: Complemental strand, 10474223 - 10474161
Alignment:
Q  389 agcaattcgtagggctaccatagcacggaaatttataccggtattcatgggtagtgctgtcaa 451  Q
    |||| |||||||||| |||||||||||||| ||||||||  |||||||||| |||||| ||||    
T  10474223 agcagttcgtagggccaccatagcacggaagtttataccaatattcatgggcagtgctttcaa 10474161  T

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Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 389 - 445
Target Start/End: Original strand, 7476566 - 7476622
Alignment:
Q  389 agcaattcgtagggctaccatagcacggaaatttataccggtattcatgggtagtgc 445  Q
    |||||||| |||||| || ||||||| ||||||| ||||||| ||||||||||||||    
T  7476566 agcaattcatagggcaactatagcacagaaatttgtaccggttttcatgggtagtgc 7476622  T

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Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 389 - 440
Target Start/End: Complemental strand, 10848854 - 10848803
Alignment:
Q  389 agcaattcgtagggctaccatagcacggaaatttataccggtattcatgggt 440  Q
    |||| |||||||||| ||||||||||  ||||||||||| ||||||||||||    
T  10848854 agcagttcgtagggccaccatagcacacaaatttataccagtattcatgggt 10848803  T

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Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 475 - 537
Target Start/End: Original strand, 9081351 - 9081413
Alignment:
Q  475 tggatggtgtagttacttatttgccttgtccgattgaagttagtaattatgctcttgaccaat 537  Q
    ||||||||||| ||| ||||||||| ||||| |||||||  ||||||||||| || |||||||    
T  9081351 tggatggtgtacttaattatttgccgtgtccaattgaagcaagtaattatgcgctcgaccaat 9081413  T

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Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 389 - 446
Target Start/End: Original strand, 7478731 - 7478788
Alignment:
Q  389 agcaattcgtagggctaccatagcacggaaatttataccggtattcatgggtagtgct 446  Q
    |||| ||| |||||| |||| |||||| |||||||||||||| |||||||| ||||||    
T  7478731 agcagttcttagggcaaccagagcacgcaaatttataccggtcttcatgggcagtgct 7478788  T

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Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 465 - 529
Target Start/End: Complemental strand, 10505551 - 10505487
Alignment:
Q  465 caaccacttctggatggtgtagttacttatttgccttgtccgattgaagttagtaattatgctct 529  Q
    |||| |||| ||||||||||  ||| ||||||||| ||||| | ||||| |||||||||||||||    
T  10505551 caactacttttggatggtgtgcttaattatttgccgtgtccaactgaagctagtaattatgctct 10505487  T

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Target: chr1 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 1 - 299
Target Start/End: Complemental strand, 50301625 - 50301326
Alignment:
Q  1 taatgcttttccttcttatcacttcactgcgtgtatcatt-gttattctttatatagtaatagaaaaagactagtatcaattttgctgatcattttattt 99  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50301625 taatgcttttccttcttatcacttcactgcgtgtatcatttgttattctttatatagtaatagaaaaagactagtatcaattttgctgatcattttattt 50301526  T
Q  100 taaacagatttttattcatttggggtcacccaatttcccttcaatagcaaaaaagttatcttttttcatatttgttattgactttctttgacacggtttc 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50301525 taaacagatttttattcatttggggtcacccaatttcccttcaatagcaaaaaagttatcttttttcatatttgttattgactttctttgacacggtttc 50301426  T
Q  200 ttgaagagtcagaaatgaagtcaaagtttctaaatttggttgctttttatggtgatagagtgcatcccggagtaggagaagtggcggaggcagcagtgaa 299  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  50301425 ttgaagagtcagaaatgaagtcaaagtttctaaatttggttgttttttatggtgatagagtgcatcccggagtaggagaagtggcggcggcagcagtgaa 50301326  T

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Target: chr7 (Bit Score: 59; Significance: 1e-24; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 458 - 556
Target Start/End: Complemental strand, 15044898 - 15044800
Alignment:
Q  458 gggggtacaaccacttctggatggtgtagttacttatttgccttgtccgattgaagttagtaattatgctcttgaccaatccaagaatgaggagaaggt 556  Q
    |||| ||||||||||||||||||||||| ||| ||||||||| ||||| |||||||||| ||||||||| ||||||||||| || || |||||||||||    
T  15044898 ggggatacaaccacttctggatggtgtacttagttatttgccatgtccaattgaagttaataattatgcccttgaccaatctaataaggaggagaaggt 15044800  T

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Target: chr7; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 385 - 456
Target Start/End: Complemental strand, 15045641 - 15045570
Alignment:
Q  385 agggagcaattcgtagggctaccatagcacggaaatttataccggtattcatgggtagtgctgtcaaaaaca 456  Q
    ||||||| ||||||||||||||| | || ||||||||||||||||||||||||||||||||| |||||||||    
T  15045641 agggagccattcgtagggctaccgtggcgcggaaatttataccggtattcatgggtagtgctttcaaaaaca 15045570  T

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Target: chr7; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 553 - 629
Target Start/End: Complemental strand, 15044061 - 15043985
Alignment:
Q  553 aggttcagctgactggaagtcccgatgggccccttgtagcattggctttcaagttggagcaaaggaagtttggtcag 629  Q
    ||||| ||||| |||| | ||| |||||||||||||||||||||||||||||||||||| |||| ||||||||||||    
T  15044061 aggttgagctgcctggtaatcctgatgggccccttgtagcattggctttcaagttggaggaaagtaagtttggtcag 15043985  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 305 - 358
Target Start/End: Complemental strand, 15047606 - 15047553
Alignment:
Q  305 agaacctgtgtcagaggtagatgatgtacttgctgaagcgtttcttagcgatga 358  Q
    |||| ||||||||||||| |||||| ||||||| |||||||||||||| |||||    
T  15047606 agaaactgtgtcagaggttgatgatatacttgcggaagcgtttcttagtgatga 15047553  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 390 - 441
Target Start/End: Complemental strand, 44307073 - 44307022
Alignment:
Q  390 gcaattcgtagggctaccatagcacggaaatttataccggtattcatgggta 441  Q
    |||||||||||||| |||||||||||||||||| ||||  | ||||||||||    
T  44307073 gcaattcgtagggcaaccatagcacggaaatttgtaccaattttcatgggta 44307022  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 458 - 556
Target Start/End: Complemental strand, 33601124 - 33601026
Alignment:
Q  458 gggggtacaaccacttctggatggtgtagttacttatttgccttgtccgattgaagttagtaattatgctcttgaccaatccaagaatgaggagaaggt 556  Q
    |||| ||||||||||| ||||||||||  ||| | ||||||| ||||| | |||||  | ||||||||||||   |||||| ||||||||||| |||||    
T  33601124 ggggctacaaccacttttggatggtgtgcttaataatttgccgtgtccaactgaagcaactaattatgctctcatccaatctaagaatgaggaaaaggt 33601026  T

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