View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20044_low_3 (Length: 634)
Name: NF20044_low_3
Description: NF20044
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20044_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 491; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 491; E-Value: 0
Query Start/End: Original strand, 17 - 622
Target Start/End: Complemental strand, 53592895 - 53592299
Alignment:
| Q |
17 |
aaatgaaaccatgtgtgcttatgaatgattgtagtaaaggaggtgagttatggtgatgagttgttagagaggttgagatgatatgttaaatgttggaact |
116 |
Q |
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| T |
53592895 |
aaatgaaaccatgtgtgcttatgaatgattttagtaaaggaggtgagttatggtaatgagttgttagagaggttgagatgatatgttaaatgttgaaact |
53592796 |
T |
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| Q |
117 |
tatggtggttttataaagagaaagtaagaaattaagaatgagttttgaaattctcacgggccccttttattggtgcattcttctttgtaaagagaagcat |
216 |
Q |
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| T |
53592795 |
tatggtggttttataaagagaaa--------ttaagaatgagttttgaaattctcacggcccccttttattggtgcattcttctttgtaaagagaagcat |
53592704 |
T |
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| Q |
217 |
aggatc-ccaacccaactactcttgatatacttttgtttgttgtaacttgtaagtgatcaatccaatttttattgtttgcaggaaattggaaaaagtaga |
315 |
Q |
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| T |
53592703 |
aggatgtccaacctaactactcttgatgtacttttgtttgttgtaacttgtaagtgatcaatccaatttttattgtttgcaggaaattggaaaaagtaga |
53592604 |
T |
|
| Q |
316 |
tgacaagaagaaagatgtttgtttgatattatcttttagaaggaagcatataggaaacacgcgatacaaccttacttgcattgctgttctcttcaagtag |
415 |
Q |
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|||||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
53592603 |
tgacaataagaaagatgtttgtttgattttatcttt--gaaggaagcatataggaaacacgcgatacaaccttacttgcattgttgttctcttcaagtag |
53592506 |
T |
|
| Q |
416 |
ttgggtttgggacagataggtgaaatcgctatgttctctctcctgctaccctagccgccgccaacaacctccataaccactcacctctcctcctgcaatc |
515 |
Q |
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| T |
53592505 |
ttgggtttgggacagataggtgaaatcgctatgttctctctcctgctaccctagccgccgccaacaacctccataaccactcacctctcctcctgcaatc |
53592406 |
T |
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| Q |
516 |
caaacacgttttccatcatgtagtctcacgcaggtggtgaacgcgctcctcgccgcttcaccaccctcgctccttgttccgttgggtagctggggccgtc |
615 |
Q |
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| T |
53592405 |
caaacacattttccatcatgtagcctgacgcaagtggtgaacgcgctcctcgccgcttcaccaccctcgctccttgttctgttgggtagccggcgccgtc |
53592306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 126; Significance: 1e-64; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 465 - 622
Target Start/End: Original strand, 23779380 - 23779537
Alignment:
| Q |
465 |
cctagccgccgccaacaacctccataaccactcacctctcctcctgcaatccaaacacgttttccatcatgtagtctcacgcaggtggtgaacgcgctcc |
564 |
Q |
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|||||||||| || ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| ||||||||||||||||||||||||| |
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| T |
23779380 |
cctagccgccaccgacaacctccataaccactcacctctcctcctccaatccaaacacgtttttcatcatgtagcctcacgcaggtggtgaacgcgctcc |
23779479 |
T |
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| Q |
565 |
tcgccgcttcaccaccctcgctccttgttccgttgggtagctggggccgtctgtgctc |
622 |
Q |
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| T |
23779480 |
tcgccgcttcaccaccctcgctccttgttccgttgggtagccggcgccgtatgtgctc |
23779537 |
T |
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