View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20044_low_4 (Length: 557)
Name: NF20044_low_4
Description: NF20044
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20044_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 497; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 497; E-Value: 0
Query Start/End: Original strand, 1 - 522
Target Start/End: Original strand, 4676520 - 4677041
Alignment:
| Q |
1 |
aaactgaagatcattaacccattccaatgtttgaatcgttcctctccaagcaatcacaatatcccttctccccaacacatctttcccttcatcattagcc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4676520 |
aaactgaagatcattaacccattccaatgtttgaatcgttcctctccaagcaatcacaatatcccttctccccaacacatctttcccttcatcattagcc |
4676619 |
T |
|
| Q |
101 |
acagcaacaaatccaatccaatttgattccttactccaagcttctctagataaagactttataataaacgcttccggaacattgatttcggaagtcgcat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4676620 |
acagcaacaaatccaatccaatttgattccttactccaagcttctctagataaagactttataataaacgcttccggaacattgatttcggaagtcgcat |
4676719 |
T |
|
| Q |
201 |
aaataaattttgtcacagaatatttaaaaggatttccattttctnnnnnnnctttagaaaagaaatcattctttgcatacctacaactacctgcaaactt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4676720 |
aaataaattttgtcacagaatatttaaaaggatttccattttctaaaaaaactttagaaaagaaatcattctttgcatacctacaactacctgcaaactt |
4676819 |
T |
|
| Q |
301 |
tgatgctttctctgtgttgaaagcatcgtatgttgcttgtgccatttcaccatagtggattatgtaacgtcgtagatcaatgtcaagagggtctaataga |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4676820 |
tgatgctttctctgtgttgaaagcatcgtatgttgcttgtgccatttcaccatagtggattatgtaacgtcgtagatcaatgtcaagagggtctaataga |
4676919 |
T |
|
| Q |
401 |
cctatccaatgattttcaccactgagttgttgccatttgtttgctatgttgctgctgttgtttggtttcttcttcttcaaattgtttctccatcttttga |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4676920 |
cctatccaatgattttcaccactgagttgttgccatttgtttgctatgctgctgctgttgtttggtttcttcttcttcaaattgtttctccatcttttga |
4677019 |
T |
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| Q |
501 |
tcatgattgctactctgcttgg |
522 |
Q |
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|||||||||||||||||||||| |
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| T |
4677020 |
tcatgattgctactctgcttgg |
4677041 |
T |
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